LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal6g3570	ATGCGATTAAAGGTTAGAGTCATTCACCTTTGGAGTATTCCGGATCGATCCAATCCTTCCGAGGAGGGAAGTATTCATATGCTACTGCTGGACGAAAAGTGTGAAAAAATTCATGATTCTATAAGAAAGAATCTGATCCCACTCTTCAAGGAAGAAATCAAGGAAGGATCCTCCTATGTGTTTGAAAATTTTATGGTTGGTTCCAATGACAATGCATACAAGACTACTGAGCACAAGTATAAAATTAATTTTATGGGAAGTACTAAGACATTCAAAGTAACTGCTGTTGACATTCCTAAATGTCATTTCCAGTTTGTTCCATTTCTCGAAATTTTGGCTGCAACTAGAGAGGATAAATTGCTTGATGTCATTGGTCATGTAGTAGAGAAGGATGTGTTAAAAGCAACTGAGAAAAATGGTAAAAAGAGCAAGGTTATGGATGTTACTCTTGAAGATTTGGAAGGAAATAGAGTACATTGCACTTTATGGGATGAATACGCTGAAAGGATGAAACAATTTCTGGACTCCCATGATTCATCTCAGCCAGTTATTGTGCTACTCCAGCTTTGCAAGCTAAAGAAATTTTTTGGTCTATTGAATGAAACTGACGTTGAGCTTACTCAAGTTGTTAGCCAAATGAGTGTTCCAACGTTACCCACTTTATCTGATGATTTGCTTCATACTCGAAGGATGACCATTCAGGATTTAATTGAATCAACTGAGAAATGCTTTGGTTCTGTTCTGGCGAGAACATGTGAGCTTCAGAAAGATTTGGGATGGTACTATCAAGCATGCACCAAGTGTGCGTCAAGGGTGAATATTCTTGCCGGGAATATGTACTGCGATAGATGCAAGAAAACAAGAACTGCTGTTCCTAGGTTTAAGGTTCATGTTCAGGTGATAGACAACACTGGATCGACGACATTTATTTTGTTTGATCGTGTTGTTTCTCAAGTTTTGGGGAGAAGTGTTCAAGATTTGCTTGACGGGATGGCAATTAGGAACGATTCTAGCAAGGACTATCCAACTGAACTAGATGTTTTTGTTGACAAAAGAATGTTGTTCAAGGTGGAAGTAAGTGAATCCAATTTATTTCGCAACTGGCGCAGTTACACTGTGAAAAGATTGACTGAGGATAATGAGATTATCAAAAAGTTCCGGACACTTCATGGGATTAATATGGGCAATGAGGAAGAGGAGGCCAATTATGTTGACGCATTAAGTGAGATGGCTGATAACATTCCTGTTGTTGAAGGTGGTGACTCAAACCACAAAGATGTGTTGCCTTTGACAACATCTGAAACACCAACAAGCAAGTCATTGGGAAAAAGGACACCTGATAGTTTGGATGCAATGGGTGAGGATAATGTTGAAGGTGGTGAAGCATCAACATCAAAAGAGCCAAAAATGCTATGTATCAAAGATTGA	1428	0.388	MRLKVRVIHLWSIPDRSNPSEEGSIHMLLLDEKCEKIHDSIRKNLIPLFKEEIKEGSSYVFENFMVGSNDNAYKTTEHKYKINFMGSTKTFKVTAVDIPKCHFQFVPFLEILAATREDKLLDVIGHVVEKDVLKATEKNGKKSKVMDVTLEDLEGNRVHCTLWDEYAERMKQFLDSHDSSQPVIVLLQLCKLKKFFGLLNETDVELTQVVSQMSVPTLPTLSDDLLHTRRMTIQDLIESTEKCFGSVLARTCELQKDLGWYYQACTKCASRVNILAGNMYCDRCKKTRTAVPRFKVHVQVIDNTGSTTFILFDRVVSQVLGRSVQDLLDGMAIRNDSSKDYPTELDVFVDKRMLFKVEVSESNLFRNWRSYTVKRLTEDNEIIKKFRTLHGINMGNEEEEANYVDALSEMADNIPVVEGGDSNHKDVLPLTTSETPTSKSLGKRTPDSLDAMGEDNVEGGEASTSKEPKMLCIKD*	476

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal6g3570	475	Gene3D	-	1	91	IPR012340	-
	Mal6g3570	475	Gene3D	-	222	390	IPR012340	-
	Mal6g3570	475	SUPERFAMILY	Nucleic acid-binding proteins	2	92	IPR012340	-
	Mal6g3570	475	SUPERFAMILY	Nucleic acid-binding proteins	102	202	IPR012340	-
	Mal6g3570	475	CDD	RPA1_DBD_A_like	2	89	-	-
	Mal6g3570	475	PANTHER	REPLICATION FACTOR A 1, RFA1	14	388	IPR004591	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310
	Mal6g3570	475	CDD	RPA1_DBD_B_like	122	197	-	-
	Mal6g3570	475	PANTHER	BNAC07G49340D PROTEIN	14	388	-	-
	Mal6g3570	475	SUPERFAMILY	Nucleic acid-binding proteins	228	380	IPR012340	-
	Mal6g3570	475	Gene3D	-	96	218	IPR012340	-
	Mal6g3570	475	Pfam	Domain of unknown function DUF223	27	115	IPR003871	-
	Mal6g3570	475	Pfam	Replication factor-A C terminal domain	250	363	IPR013955	-
	Mal6g3570	475	MobiDBLite	consensus disorder prediction	426	444	-	-
	Mal6g3570	475	CDD	RPA1_DBD_C	259	380	IPR013955	-
	Mal6g3570	475	MobiDBLite	consensus disorder prediction	418	475	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal6g3570	Mal-Chr6	104788224	104790657	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal6g3570	3	361	Core DNA Replication Machinery Family	AT5G08020	21.212	8.27e-13	68.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal6g3570	-		-	mtr:MTR_1g105785	451.825