Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3531 ATGTCTTCAACCGGCGACAACCCCACCGTTCCCACCGCCACCAACTCCGACGACCTCCGTCGTTACTTTTGCCACCAGTGCGAACGCACCGCCTTCATCTCCACCACCTCCTCCGATCTCATCTGCCCCAATTGCAACTCCACTTTCATCGAAGAACTTGAACCCTCACCTCCTAACCCTAACCCTAATCCCAATCCCGTTCCTCCTTTCTTCTCCTACACCAACGACTTCCCCGCCTCCGGCTTCTCCTTTCCATTGCTTTTTCCCGGTGCCGGTGACCCCCGCTCCGCCGCTGCTTCTCAAGCGTTCAATGATGTCTCTGCTTTGTTTTCATCAACGCCGCCGTCGATGTTACCTCCGCCGTCGATGTTACCTCCGCCGTCGATGCTACCGCCACCGTCGATGTTACCGCCACCGCCTTTCGGAGAAGCTTTTAATCCGATGGCGTTTATTCAAAACTATCTCCGGAACATGAATGCTGGTGGAGGAGGAGGGAATTTTCAGTTCATAATTAACGACGGTGATGATCAAGGTCGGTTTCGGTTTCCAGGAAACGCTAATCCGGGAGATTATTTCTTTGGTCCAGGGCTTGAAGATCTGATTCAACAATTGGCGGAGAATGATCCGAGTCGGAGAGGGACGCCACCGGCGTCCAAGTCTGCTGTTGAAAAGCTGCCGGTGATTGAAGTCACGGCGGAGTTGCTTGAATCTGATTCATCTCAGTGTGCTGTGTGCAAGGACACATTTGCCCTCGGTGAAAAGGCGAAGCAGATGCCTTGTAAGCATATATACCATGATGATTGTATCTTGCCCTGGTTGGAATTGCATAATTCTTGTCCTGTTTGTCGCTTTGAGTTGCCTACAGATGATCCCGATTATGAGCAGCGGGCTCGTGGCGGTGGAAGTGGAGGAGGAGCTGGTGCTGCTGCTGGTGGTTCTGGTGGTGGTGATGATTCTCTGAGGACAAGGTTTAGGGTTTCTTTGCCCTTTATGCCGTTTCGGCATGTACCTTCATCTTCTGGTGCTGCTGAAGGAACCAGCAATGTGAGCAACAGTGATAGCAGTAGTGGAAGTGGTAGTAGAGACCCCGATGCTCAGAATAGGGGGAACCAAAATTTTGAGTCAGAGACCAGACAAGAAGATCTTGATTGA 1152 0.5174 MSSTGDNPTVPTATNSDDLRRYFCHQCERTAFISTTSSDLICPNCNSTFIEELEPSPPNPNPNPNPVPPFFSYTNDFPASGFSFPLLFPGAGDPRSAAASQAFNDVSALFSSTPPSMLPPPSMLPPPSMLPPPSMLPPPPFGEAFNPMAFIQNYLRNMNAGGGGGNFQFIINDGDDQGRFRFPGNANPGDYFFGPGLEDLIQQLAENDPSRRGTPPASKSAVEKLPVIEVTAELLESDSSQCAVCKDTFALGEKAKQMPCKHIYHDDCILPWLELHNSCPVCRFELPTDDPDYEQRARGGGSGGGAGAAAGGSGGGDDSLRTRFRVSLPFMPFRHVPSSSGAAEGTSNVSNSDSSSGSGSRDPDAQNRGNQNFESETRQEDLD* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3531 383 Pfam zinc-ribbon 21 53 IPR039525 GO:0061630
Mal6g3531 383 MobiDBLite consensus disorder prediction 293 321 - -
Mal6g3531 383 MobiDBLite consensus disorder prediction 335 383 - -
Mal6g3531 383 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 15 318 - -
Mal6g3531 383 SMART ring_2 242 282 IPR001841 -
Mal6g3531 383 CDD RING-H2_RNF126_like 241 283 - -
Mal6g3531 383 ProSiteProfiles Zinc finger RING-type profile. 242 283 IPR001841 -
Mal6g3531 383 MobiDBLite consensus disorder prediction 340 373 - -
Mal6g3531 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 289 IPR013083 -
Mal6g3531 383 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 15 318 - -
Mal6g3531 383 Pfam Ring finger domain 241 283 IPR001841 -
Mal6g3531 383 SUPERFAMILY RING/U-box 222 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3531 Mal-Chr6 104186601 104187752 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g3531 183 298 C3H Transcription Factor Family AT5G01980 51.724 1.30e-34 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3531 - K11982 mtr:MTR_6g079660 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g3531 6 104186601 104187752 Mal6g3531 6 104186601 104187752 ECH