Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3512 ATGGTTACTCCTGTTACTGCTATGGCTAACATTGTTCTTGGAGTACCTTCCCTTTCTCTACCACAACTACCCTCAACAAACTCAAACACTTTCACTCTCAACACCCAAAAACATAAACTTTATCTCAATTTCTCTCAAACCAACAACACAACAACCTCATTTTCTTCTTTCTTATCATCAACACTTAGAAACAATGTTCATTGTTCTATGTTGGCTTGTCTTCCTCCTGCTTCTGAATCCTCATCTACATCTTCCGCTTCTCCTTCAACTAAGCTATATGTCAGTGGGCTGTCATTTCGTACAACTGAAGAGAGCTTGCGAAATGCATTTAAGAATTTCGGTCAACTTGTGGATGTAAATCTGGTGATGGATAAAGTTGCCAATAGACCAAGAGGGTTTGCTTTTCTTCGTTATGAAACGGAAGAGGAATCAAAGAAGGCTATTGAAGGAATGCATGGAAAGTTTCTGGATGGTAGGGTTATATTTGTGGAAGTTGCCAAACCAAGATCAGAGCTACGGCAGAGATCCAAGCAAAACACAACATAG 546 0.3974 MVTPVTAMANIVLGVPSLSLPQLPSTNSNTFTLNTQKHKLYLNFSQTNNTTTSFSSFLSSTLRNNVHCSMLACLPPASESSSTSSASPSTKLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYETEEESKKAIEGMHGKFLDGRVIFVEVAKPRSELRQRSKQNTT* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3512 181 PANTHER NUCLEOLAR PROTEIN 8 31 179 - -
Mal6g3512 181 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 168 IPR000504 GO:0003723
Mal6g3512 181 SMART rrm2_1 91 164 IPR003954 GO:0003676
Mal6g3512 181 SMART rrm1_1 91 164 IPR000504 GO:0003723
Mal6g3512 181 Gene3D - 76 181 IPR012677 -
Mal6g3512 181 SUPERFAMILY RNA-binding domain, RBD 71 177 IPR035979 GO:0003676
Mal6g3512 181 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 161 IPR000504 GO:0003723
Mal6g3512 181 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 6, CHLOROPLASTIC 31 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3512 Mal-Chr6 103521849 103525243 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g3512 79 179 Eukaryotic Initiation Factors Gene Family AT4G34110 31.429 5.45e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3512 - K13195 gmx:100305561 213.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g3512 6 103521849 103525243 Mal6g3512 6 103521849 103525243 ECH