LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal6g3511	ATGGAGAATAAGGATCAAGTTCAAGGCACAAAGTCAACTGGCACAGCTAGTAAGTGTCATTCCAAAGGTGGATCGCAGTCTGAAAATGATGCGAAGTCGCAGGATATACCTTCTGCTGGAAACAACCTTACTCCCAAGGTTAGGAAACCGTATACCATCACTAAACAAAGGGAGAAATGGACCGAGGAAGAGCATCAAAAGTTCCTTGAGGCTTTGAAATTGTATGGTCGTGGCTGGCGTCAAATTGAAGAACATATAGGATCCAAAACTGCTGTTCAGATTCGAAGCCATGCTCAAAAGTTTTTCTCTAAGGTTGTGCGGGAACCTGATGGCAGTGCTGAAAGTCCTATTCAGCCAATTGACATACCTCCTCCTCGGCCGAAGAGGAAACCCCTTCATCCGTACCCTCGCAAATCAGTTGACTTTTTCAAAGGACAGTCTGTACCAAATGAATCAGAAACATCTCCATCCGTTAACCTGTCGGCTGCTGAAAACGACACCCAATCTCCAACCTCTGTACTATCTGCACTTGGTTCAGATGCATTTGGGTCGGCAGGATTTTCTGAGCAGACTAATAGATGTCTTTCTCCAAATTCTTGCACCACCGAGATTCACCCGGTTAACTTGTCACCTGTTGAAAAAGAAAATGATTGCCAGACATCCAAACCATCTGAGGAGGAAGAGAAAGGATCTCTAGCTTCAATTCCTTTATCCAGCGGCTCAAAACCACTTATGTGCATGAAGTCCGAGATTATTTCTTCCGAGGAAACTCAATCTTTCAAAGAAGATGCTGCAAATATGCCACAAATCACTAGTATTAAGCTGTTTGGTAGAACAGTCTCTATGGTTGGTGCTCAGAAGTCAATGAAGGATGACGATGAAAATACTAAGCTAATAACTATCAAGTCTAATGAAATGGATGATCTTGAGAAGGTTGACCAAAAAGAGGTATCAGAGCAGCTTGATATACAATTATCACTAGGCATGTGTACAACTGATGGAGCTCAAGTGAGCAACATGGAACAATCGAAGGAGAATCCATATGTCGGCAAGTGCGCATCTTTACCATTGTGGAGTTTGTACCAAGGCCTTCCAACTTTCCACCTCATGCCATGCAATCATCAAATTCTTAATCCTGTGCCTCTTAGGCCTTGTTTGAAGGTAATAACAAGAGAGGAGGAAAGTTCTTGCACTGGTTCCAATACTGAATCAGTCTGTGATATGGAAAATCAAAGCAAGAACAACTCATCGGATACCGATGATTCTCAAACTCAAAAACATCCTCAGGAAGGAGTAGTCCTTAAGAAATCTGGAAGAGGGTTTGTGCCATATAAAAGATGTATAGCTGAAAGAGATGAAAATTCTTTAATTGTTGGCTTGGAAGAAAGAGAGGGACAAAGAGCTCGTGTGTGTTCATAG	1419	0.4235	MENKDQVQGTKSTGTASKCHSKGGSQSENDAKSQDIPSAGNNLTPKVRKPYTITKQREKWTEEEHQKFLEALKLYGRGWRQIEEHIGSKTAVQIRSHAQKFFSKVVREPDGSAESPIQPIDIPPPRPKRKPLHPYPRKSVDFFKGQSVPNESETSPSVNLSAAENDTQSPTSVLSALGSDAFGSAGFSEQTNRCLSPNSCTTEIHPVNLSPVEKENDCQTSKPSEEEEKGSLASIPLSSGSKPLMCMKSEIISSEETQSFKEDAANMPQITSIKLFGRTVSMVGAQKSMKDDDENTKLITIKSNEMDDLEKVDQKEVSEQLDIQLSLGMCTTDGAQVSNMEQSKENPYVGKCASLPLWSLYQGLPTFHLMPCNHQILNPVPLRPCLKVITREEESSCTGSNTESVCDMENQSKNNSSDTDDSQTQKHPQEGVVLKKSGRGFVPYKRCIAERDENSLIVGLEEREGQRARVCS*	473

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal6g3511	472	MobiDBLite	consensus disorder prediction	1	62	-	-
	Mal6g3511	472	SUPERFAMILY	Homeodomain-like	51	105	IPR009057	-
	Mal6g3511	472	Pfam	Myb-like DNA-binding domain	57	100	IPR001005	-
	Mal6g3511	472	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	52	106	IPR017930	-
	Mal6g3511	472	Gene3D	-	59	106	-	-
	Mal6g3511	472	ProSiteProfiles	SANT domain profile.	55	106	IPR017884	-
	Mal6g3511	472	MobiDBLite	consensus disorder prediction	397	435	-	-
	Mal6g3511	472	MobiDBLite	consensus disorder prediction	397	430	-	-
	Mal6g3511	472	PANTHER	PROTEIN REVEILLE 7-RELATED	5	459	-	-
	Mal6g3511	472	ProSiteProfiles	Myb-like domain profile.	52	102	IPR001005	-
	Mal6g3511	472	PANTHER	SWI/SNF COMPLEX-RELATED	5	459	-	-
	Mal6g3511	472	MobiDBLite	consensus disorder prediction	145	175	-	-
	Mal6g3511	472	CDD	SANT	59	102	IPR001005	-
	Mal6g3511	472	SMART	sant	56	104	IPR001005	-
	Mal6g3511	472	TIGRFAM	myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class	55	104	IPR006447	GO:0003677
	Mal6g3511	472	MobiDBLite	consensus disorder prediction	105	175	-	-
	Mal6g3511	472	MobiDBLite	consensus disorder prediction	1	49	-	-
	Mal6g3511	472	MobiDBLite	consensus disorder prediction	211	241	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal6g3511	Mal-Chr6	103517664	103521017	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Mal6g3511		Myb_DNA-binding	2.8e-13	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal6g3511	-		-	gmx:778089	608.601