Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3398 ATGTTAGCTAATAGCTTATCTCCATCTTCACTTCCATCTTCTGAGCCTTTTTCTTGCAATGAAAATGGCACTTCTTCCACTAATAAAAGGAAAAGAAGACCTGCCGGAACACCAGATCCAGATGCAGAAGTGGTGTCTCTCTCACCAAAAACATTGTTGGAATCAGATCGTTATGTATGTGAGATCTGCAACCAAGGATTCCAAAGGGACCAAAATTTACAGATGCATAGAAGAAGGCATAAAGTACCATGGAAGCTATTGAAGAGAGAAACACCAGTTGTTAGAAAAAGAGTTTTTGTTTGTCCTGAACCAACTTGTTTGCACCATGATCCTTGTCATGCTTTAGGTGATCTTGTTGGTATCAAAAAACATTTTAGAAGAAAACATAGTAATCATAAACAATGGGTTTGTGAAAGATGTTCTAAAGGTTATGCAGTGCAATCTGATTATAAAGCTCATCTCAAAACTTGTGGTACTAGAGGTCATTCTTGTGATTGTGGTCGTGTCTTCTCAAGGGTTGAGAGCTTTATTGAGCATCAAGATGCTTGCAACATGGGAAGGATCCATAATTCAGAATCTCAACCACTACAAACACCAACTGCATGCTTATCAAGAACAGCTTCAAGTCCAAGTCCATCAAGTGAAACAAATTTCAACACATGTCCATGGCAAACAAGGCTTCAAGTAATGCAAAAATCAACAAAAGAATCAACAATATTCATGAACCCTATTACTCCTATTACTACTATTGCACCTTCTTCTCAAACTTTGTCCAAGAACAATAAACTTCTACTCCATCCAAACTTGGAACTTCAACTCTCCACGACAAACAACGCCAACACGTGTCTGAGACCAGACACGTCTTCAATCAGAAGTGTTGGTACAGAGGCTACTCAGAAGGCTAACCGATCGACTCAGTTGCATCTCTCAATAGGGTCATCAGAAATGAGTCATGAGAAAAATGAATCAAACAATATTAGAAACTCAAACTCATCACCAAAAGAGAGTAGCAATAGTAATGAGAAAGTTCAATCAACAACAAACAACATGGCTTTCTTGAGGGTTCAAGAACAAGCAAAGGAACAATTAAGGATAGCTATGGCTGAAAAAGCTTATGCTGAAGAAGCAAGGAAACAAGCAAAGAAACAAATTGAAATGGCTGAACAAGAGTTTAACAATGCAAAGAGAATTAGACAACAAGCACAAGGTGAACTTGATAAAGCTTATGGATTGAAACAACATGCCATCAAGCAAATCAATTCAACTATGCTTCAAATCACTTGTCAAGCTTGCAAACAACAATTTCAACATGAAGATAACTCTTTGGGGTTGAGCTATGTTTCTTCAGCCATAACTGCTGAAGGTGGTGAAGTAGAAAATGGTGATGGAAAAGGCAAAACAACTAACTAG 1410 0.3794 MLANSLSPSSLPSSEPFSCNENGTSSTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRIHNSESQPLQTPTACLSRTASSPSPSSETNFNTCPWQTRLQVMQKSTKESTIFMNPITPITTIAPSSQTLSKNNKLLLHPNLELQLSTTNNANTCLRPDTSSIRSVGTEATQKANRSTQLHLSIGSSEMSHEKNESNNIRNSNSSPKESSNSNEKVQSTTNNMAFLRVQEQAKEQLRIAMAEKAYAEEARKQAKKQIEMAEQEFNNAKRIRQQAQGELDKAYGLKQHAIKQINSTMLQITCQACKQQFQHEDNSLGLSYVSSAITAEGGEVENGDGKGKTTN* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3398 469 Coils Coil 356 404 - -
Mal6g3398 469 MobiDBLite consensus disorder prediction 1 25 - -
Mal6g3398 469 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Mal6g3398 469 SUPERFAMILY beta-beta-alpha zinc fingers 55 81 IPR036236 -
Mal6g3398 469 Gene3D Classic Zinc Finger 36 98 - -
Mal6g3398 469 SMART c2h2final6 135 162 IPR013087 -
Mal6g3398 469 SMART c2h2final6 58 80 IPR013087 -
Mal6g3398 469 SMART c2h2final6 99 129 IPR013087 -
Mal6g3398 469 PANTHER OS03G0310200 PROTEIN 1 454 IPR039288 GO:0009630
Mal6g3398 469 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 1 454 - -
Mal6g3398 469 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Mal6g3398 469 MobiDBLite consensus disorder prediction 1 45 - -
Mal6g3398 469 MobiDBLite consensus disorder prediction 280 344 - -
Mal6g3398 469 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3398 Mal-Chr6 99130784 99133950 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g3398 22 459 C2H2 Transcription Factor Family AT1G25250 49.666 3.26e-127 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal6g3398 zf-C2H2 0.0045 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3398 K25871 - gmx:100785333 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g3398 6 99130784 99133950 Mal6g3398 6 99130784 99133950 ECH