Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3396 ATGGAAGGAGGAGGAATGTTATCATCTTCATCATCACATTCACAAAACTATATCTACAGAGAGTGTTTACGAAACCATGCAGCAAGCCTTGGAAGCTACGCCACCGACGGCTGCGGTGAATTCACGGTCGACGACACATCACCATCCGCCGCAAACAGCCTCCAATGTGCAGCCTGCGGCTGTCACCGGAACTTCCACCGCAAAATAACCGCGATCACAAGAGAGAGTGCCGCGGCCGCTGCAATGTCGGATCAGGTGATGGAATATTCCGGTGGAGGAGGTAGCGGCGGTGATGGGAGGAGGAAGAGGTACCGGACTAAATTTACGCCGGATCAGAAGGAAAAAATGTTGGGATTTGCTGAGAAATTAGGGTGGAAATTGCAGAGAAAAGAACTTGATGAAGAAATTGAAAGGTTTTGTGAAAGTGTTGGTGTGAGTAGACAAGTTTTTAAGGTTTGGATGCATAATCATAAGAATTCTTGTTTCTCTAATTCTTCTGATCCTTCTACTGGTAATGCTAATTCCTCTCTTACTCAGTGA 540 0.463 MEGGGMLSSSSSHSQNYIYRECLRNHAASLGSYATDGCGEFTVDDTSPSAANSLQCAACGCHRNFHRKITAITRESAAAAAMSDQVMEYSGGGGSGGDGRRKRYRTKFTPDQKEKMLGFAEKLGWKLQRKELDEEIERFCESVGVSRQVFKVWMHNHKNSCFSNSSDPSTGNANSSLTQ* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3396 179 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 19 69 IPR006456 -
Mal6g3396 179 Gene3D - 87 165 - -
Mal6g3396 179 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 101 159 IPR006455 -
Mal6g3396 179 Pfam ZF-HD protein dimerisation region 17 69 IPR006456 -
Mal6g3396 179 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 14 167 - -
Mal6g3396 179 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 19 68 IPR006456 -
Mal6g3396 179 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 14 167 - -
Mal6g3396 179 SUPERFAMILY Homeodomain-like 88 159 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3396 Mal-Chr6 99070556 99071095 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g3396 19 158 ZF-HD Transcription Factor Family AT1G14440 41.270 2.18e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mal6g3396 ZF-HD_dimer 1.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3396 - - cmo:103504587 230.335