Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3341 ATGAGCTTGCAACAAAGACGAGAAAGGAGGGACGGGTCGAGGTTCCCTTCACAACGTCCTCCTCGCCAACAATGGATTCCGAAAGGAGCTGGAGCTTCCACCACCGCCTCCACCGCTACCACCACCACCTCCTCCACCGCTACCACCACCACTTCCCCCATCGCAACCACCACTGTTGTCCAGCCTACAAGTTTGCACTCTCATGAGAAGAACACTGATAGTGATGGTGGTCCGTCCAATCAAGGGGCTGTAGTTGCTCCACCATTGGCTAGGCATAGAAGTAATCACCATGTTCCTCATAGGGTGGAAAGGGAACATGCTGCTCACAGGGTGGAGAGGGAACATGTTGCTCATCGTGTGGAGAGGGAACATGTTGCTCACAGGATGGAGAGGGAACATGTTGCTCATCGGGTGGAGAGGGAACATGTTGCTCATAGGGTGGAGAGGGATCATGTTGCTCATCGCGTGGAAAGGGGTAGAGGGAGGAGTGGGAATATGGTGGGGAGGCAATATGGATTGAGGGACCCTAGCTTGCCTCAATTGGTGCAGGAGATTCAGGAGAAGCTCACAAGAGGTACTGTGGAGTGCATGATTTGTTATGATATGGTTCGTAGGTCCGCACCTATTTGGTCTTGCTCCAGTTGCTACTCTATCTTTCACCTGAATTGTATCAAGAAGTGGGCTCGTGCGCCCACCTCAGTTGATTTATCGGCAGAGAAGAATCTAGGGTTTAACTGGCGGTGTCCTGGTTGTCAGTCTGTGCAACATACGTCTTCCAAGGATATTAAGTATGTTTGCTTTTGTGGGAAGAGGGTAGACCCTCCGTCTGATTTGTATCTGACACCTCATTCCTGTGGCGAACCGTGCGGGAAGCCTCTTGAAAAGGAGTTGTTTGTTACTGAAGAGAGAAAGGATGAGCTTTGCCCTCATGCTTGTGTCTTGCAATGCCATCCGGGTCCGTGTCCTCCATGTAAAGCATTTGCCCCGCCTCGTTTGTGTCCTTGTGGGAAGAAAAGAATCACCACTCGTTGCTCTGACCGGCAGTCGGATCTTACATGCGGTCAGAGCTGCGATAAGCTTCTTGATTGTGGACGTCATCGCTGTGAAAATGCATGCCATGTGGGTCCTTGTGATCCTTGTCAGGTGCTAATTGACGCCTCTTGCTTTTGTAGTAAAATGACAAAGGTTCTTTTTTGTGGGGAGATGGCTATGAAAGGTGAATTTGAAGAAGAAGGTGGAGTTTTTACTTGTGGTTCCAACTGTGGAAAGGAGCTTGGCTGTGGTAATCATATCTGCCGTGATGTTTGTCATCCGGGCAGCTGCGGTGAATGTGAATATTTACCAAGTCGGGTTAAGACATGCTGTTGTGGGAAAACGAAGTTGGAGGAGGAACGCAAGAGTTGTGTGGATCCTATACCTACCTGCTCAAAAGTATGCGGCAAGACCCTTCGTTGTAGGATACATGCTTGTAAGGAGACATGCCATGTTGGGGAATGTCCACCGTGTAAGGTCCTAATTTCACAGAAATGTCGTTGTGGCTCAACTTCCAGAACTGTGGAATGCTATAAAACAACAGAGAATCTGAAATTTACTTGTCAAAAGCCGTGTGGGGCAAAGAAGAATTGTGGAAGGCACCGGTGTAGCGAAAAGTGTTGTCCATTGTCTGGTCCAAATAATGGTTTGACTTTTCTGGATTGGGATCCTCACTTTTGTTCCATGCTGTGTGGAAAGAAGCTGAGATGTGGCCAGCATGTGTGTGAAACGTTGTGTCACAGTGGTCATTGCCCACCTTGTCTTGAAACAATCTTCACCGATTTAACATGTGCTTGTGGTATGACTTCAATTCCTCCTCCCCAACCTTGCGGTACAATGCCTCCCTTATGTCAGCTTCCATGTTCAGTTCCTCAGCCGTGTGGCCATTCAGGCTCTCATAGCTGCCATTTTGGAGATTGCCCTCCTTGTTCGGTGCCCGTGTCAAAAGAATGTGTTGGTGGCCATGTCATTCTTAGGAACATACCTTGTGGCTCAAATAATATTAAATGCAATAATCCCTGTGGAAGGACTAGACAATGCGGTTTACATGCATGTGGTAGATCATGTCACTCCCCACCTTGTGATAATCTACCTGGTTTTGTGAATGGTTTGCGAGCGCCATGTGGACAGACATGTGGTGCTCCAAGGAGTGGCTGCCGGCATATGTGTATGGCTCTATGTCACCCTGGATGTCTATGTCCCGATGTAAGATGTGAATTCCCTGTTACAATTACTTGTTCTTGTGGCCGCATATCAGCGAATGTTCCTTGTGATGTTGGTGGTAATAATAGTAATTATAATGCTGATGCCATATATGAAGCTTCGATCATTCAAAAACTGCCCATGCCACTTCAACCAGTCGATGCAAATGGCCAAAAAGTCCCACTTGGACAAAGAAAGCTGATGTGTGATGAGGAATGTGCTAAGTTGGAGCGTAAAAGGGTTCTTGCAGATGCCTTTGACATCACTCCAAGTCTTGACGCTCTCCATTTCGGTGAGAATTCTTCTTTTGAATTGCTTTCCGACACGTTTAGACGTGATCCAAAGTGGGTTTTGGCTATTGAGGAGAGATGCAAAATATTAGTACTTGGGAAAAGCAAAGGAGCTACACATGGTTTGAAAGTCCATGTCTTTTCTCCTATGATAAAGGATAAAAGAGATGCAGTGAGAATGATTGCTGAAAGATGGAAGCTCGCAGTGAACGCTGCTGGTTGGGAGCCAAAGAGATTCATCGTAATTTCCGCCACTCAGAAATCTAAGGCCCCAGCTCGTGTGCTCGGTGTTAAGGGTACCACAACTCTAAATGCGCCACTTCCTACTGCATTTGATCCCTTGGTTGATATGGACCCGAGGCTTGTTGTTTCTTTTCCAGACTTGCCAAGGGACGCTGATATTAGTGCCTTGGTTTTGAGATTCGGCGGTGAATGTGAGCTTGTTTGGTTGAATGACAGGAATGCTTTGGCTGTTTTTCACGATCCTGCCCGAGCTGCTACTGCGATGAGGAGGTTGGATCATGGAACAGTTTATCAGGGTGCTGTTTCGTTTGTCCAGAATGTCGGAGCATCTGCAGCGTCTTCTGCTACCAATGCCTGGGGAGGAATGAAAGAGGGAGGAGGACTGTCAACACTGAGAAGCAATCCATGGAAAAAGGCGGTGGTTCTCGACCCAGGTTGGAAAGAAGATTCTTGGGGTGATGAACAATGGACTACTACTGGTGATTCTGCGAATATCCAACCATCGGCTCTGAAGAAAGAAGCACCAATACCTGCTTCATTGAATCCTTGGAATGTTTTAAATCAGGAATCAAGTTCGAGTTCATCATCGGCAACTGTCATGAGAAGTGTAGCTTCTGGAAAACAAACTGAAAGCGGCAATGTCTCAATTAGGGTGGAGCCTTCTGCAGGCGGCACAAATGGAGGAAACTCGGATGCAACAGAAGCTGCTGAAGTTGTAGATGATTGGGAGAAGGCTTTTGAATGA 3513 0.4742 MSLQQRRERRDGSRFPSQRPPRQQWIPKGAGASTTASTATTTTSSTATTTTSPIATTTVVQPTSLHSHEKNTDSDGGPSNQGAVVAPPLARHRSNHHVPHRVEREHAAHRVEREHVAHRVEREHVAHRMEREHVAHRVEREHVAHRVERDHVAHRVERGRGRSGNMVGRQYGLRDPSLPQLVQEIQEKLTRGTVECMICYDMVRRSAPIWSCSSCYSIFHLNCIKKWARAPTSVDLSAEKNLGFNWRCPGCQSVQHTSSKDIKYVCFCGKRVDPPSDLYLTPHSCGEPCGKPLEKELFVTEERKDELCPHACVLQCHPGPCPPCKAFAPPRLCPCGKKRITTRCSDRQSDLTCGQSCDKLLDCGRHRCENACHVGPCDPCQVLIDASCFCSKMTKVLFCGEMAMKGEFEEEGGVFTCGSNCGKELGCGNHICRDVCHPGSCGECEYLPSRVKTCCCGKTKLEEERKSCVDPIPTCSKVCGKTLRCRIHACKETCHVGECPPCKVLISQKCRCGSTSRTVECYKTTENLKFTCQKPCGAKKNCGRHRCSEKCCPLSGPNNGLTFLDWDPHFCSMLCGKKLRCGQHVCETLCHSGHCPPCLETIFTDLTCACGMTSIPPPQPCGTMPPLCQLPCSVPQPCGHSGSHSCHFGDCPPCSVPVSKECVGGHVILRNIPCGSNNIKCNNPCGRTRQCGLHACGRSCHSPPCDNLPGFVNGLRAPCGQTCGAPRSGCRHMCMALCHPGCLCPDVRCEFPVTITCSCGRISANVPCDVGGNNSNYNADAIYEASIIQKLPMPLQPVDANGQKVPLGQRKLMCDEECAKLERKRVLADAFDITPSLDALHFGENSSFELLSDTFRRDPKWVLAIEERCKILVLGKSKGATHGLKVHVFSPMIKDKRDAVRMIAERWKLAVNAAGWEPKRFIVISATQKSKAPARVLGVKGTTTLNAPLPTAFDPLVDMDPRLVVSFPDLPRDADISALVLRFGGECELVWLNDRNALAVFHDPARAATAMRRLDHGTVYQGAVSFVQNVGASAASSATNAWGGMKEGGGLSTLRSNPWKKAVVLDPGWKEDSWGDEQWTTTGDSANIQPSALKKEAPIPASLNPWNVLNQESSSSSSSATVMRSVASGKQTESGNVSIRVEPSAGGTNGGNSDATEAAEVVDDWEKAFE* 1171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3341 1170 CDD NF-X1-zinc-finger 719 768 - -
Mal6g3341 1170 CDD NF-X1-zinc-finger 571 623 - -
Mal6g3341 1170 Pfam NF-X1 type zinc finger 638 655 IPR000967 GO:0005634|GO:0008270
Mal6g3341 1170 Pfam NF-X1 type zinc finger 581 598 IPR000967 GO:0005634|GO:0008270
Mal6g3341 1170 Pfam NF-X1 type zinc finger 363 381 IPR000967 GO:0005634|GO:0008270
Mal6g3341 1170 Pfam NF-X1 type zinc finger 427 444 IPR000967 GO:0005634|GO:0008270
Mal6g3341 1170 Pfam NF-X1 type zinc finger 310 325 IPR000967 GO:0005634|GO:0008270
Mal6g3341 1170 Pfam NF-X1 type zinc finger 691 706 IPR000967 GO:0005634|GO:0008270
Mal6g3341 1170 Pfam NF-X1 type zinc finger 542 553 IPR000967 GO:0005634|GO:0008270
Mal6g3341 1170 Pfam NF-X1 type zinc finger 479 503 IPR000967 GO:0005634|GO:0008270
Mal6g3341 1170 MobiDBLite consensus disorder prediction 1 16 - -
Mal6g3341 1170 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 164 1166 IPR034078 GO:0003700
Mal6g3341 1170 SMART znfxneu3 542 573 IPR000967 GO:0005634|GO:0008270
Mal6g3341 1170 SMART znfxneu3 730 751 IPR000967 GO:0005634|GO:0008270
Mal6g3341 1170 SMART znfxneu3 581 600 IPR000967 GO:0005634|GO:0008270
Mal6g3341 1170 SMART znfxneu3 691 721 IPR000967 GO:0005634|GO:0008270
Mal6g3341 1170 SMART znfxneu3 308 326 IPR000967 GO:0005634|GO:0008270
Mal6g3341 1170 SMART znfxneu3 427 446 IPR000967 GO:0005634|GO:0008270
Mal6g3341 1170 SMART znfxneu3 363 382 IPR000967 GO:0005634|GO:0008270
Mal6g3341 1170 SMART znfxneu3 638 656 IPR000967 GO:0005634|GO:0008270
Mal6g3341 1170 SMART znfxneu3 485 504 IPR000967 GO:0005634|GO:0008270
Mal6g3341 1170 MobiDBLite consensus disorder prediction 28 67 - -
Mal6g3341 1170 CDD NF-X1-zinc-finger 285 346 - -
Mal6g3341 1170 SUPERFAMILY RING/U-box 186 256 - -
Mal6g3341 1170 MobiDBLite consensus disorder prediction 1075 1089 - -
Mal6g3341 1170 CDD NF-X1-zinc-finger 475 523 - -
Mal6g3341 1170 MobiDBLite consensus disorder prediction 1070 1091 - -
Mal6g3341 1170 CDD NF-X1-zinc-finger 417 462 - -
Mal6g3341 1170 MobiDBLite consensus disorder prediction 1 85 - -
Mal6g3341 1170 CDD NF-X1-zinc-finger 628 676 - -
Mal6g3341 1170 MobiDBLite consensus disorder prediction 1104 1170 - -
Mal6g3341 1170 ProSiteProfiles Zinc finger PHD-type profile. 193 254 IPR019787 -
Mal6g3341 1170 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 164 1166 - -
Mal6g3341 1170 ProSiteProfiles Zinc finger RING-type profile. 196 252 IPR001841 -
Mal6g3341 1170 MobiDBLite consensus disorder prediction 1104 1155 - -
Mal6g3341 1170 CDD NF-X1-zinc-finger 353 401 - -
Mal6g3341 1170 CDD RING-CH-C4HC3_NFX1 195 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3341 Mal-Chr6 97371155 97374667 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Mal6g3341 zf-NF-X1 0.98 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3341 K12236 - gmx:100789059 1667.13