Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3116 ATGTTAAACTGCATAACAACGAATGATTATCATTGTCCAATTTCTCTGGAACTAATGACAGATCCTGTAACAGTTTCAATAGGACAAACATACAATAGAGCTTCAATTCAAAAATGGTTTAAAGCAGGAATCATGACATGTTCGAAAACTAGGGAAAGACTTATTTCCACTGAGCTTTTTCCCAACACAACACTCAAAACACTTATCCAACAATTCTGTTATGATAATGGAATTTCAATTTTAATAGCCAAATCTCACATTAATGTAACAGAAACCACGGTTAATCCCGGTAGTCCAGCTGCAGCACACGCGATACACTTTGTGTCGTGGTCACTGGCTCAGAGACTAGTTTTCGGTACAGATGAACAGAAAAACAAAGCAGCTTATGAGATTTGTTTACTAGAAAAATCAAATGTTTTCAACACGGCGTGTTTGGTTGAGATTGGAACCGTGCCACCGTTGCTTGATCTTGTTTTAACTTCAACAACGCAAGAGAACGCAATCGCTGCTCTTTTGAAGCTTTCAAAGCATAGTAATGGCCGCGAAGTTATCATAGGATATAGTTTAGAAGCTCGTCGAGTTGCAGCTGGTATAATATTTTACCTCACTTATGTAAAAGAGTACAGAAAATTAATAGGTGAAAATTCAGAAATAGTTTCTGGTTTAGTTAAATTGATAAAGAAAGGAACAATTCGAGGAAAAAAGAACGCGGTGCTTGCAATTTCCGGTTTATTATATTTTGGTGTTGTTCCCGCTATTGTTAAGGTCCTTAACAATAGCGGGAACCTTAATGTTTTAGGTTCTTCTGATAAAGGTTATGTTAATGTGGAAGGTGCTCGCGTCGTATTAGAATGCTCGGGTTTGTCTTTGGTTGTTGGGATTTTACAATCTGGAAATTCGCTCGCAGAGAAGGAGTACTGTGTTTACATTTTGGTATCACTCTGTGTTAATGTTGGTGCCGAGGTTGTTAGTGTTCTGGAAAACTATGTTTCTGTGATTATGCCTTTGCTTTACGCAATTCTTACTGATGGTACTCCACAAGCAGAAAAGAAAGCGCGGAAACTTATTAATGTCTTGCAAGAATTCCATGAGAAGAGGACTTTGGGGATGATGGATTCTTCTGTTATGCAGCAAAGATTGCTTCAATGGTCGGTACTAGTAGTATGCCTCCTCCTTTAA 1179 0.3808 MLNCITTNDYHCPISLELMTDPVTVSIGQTYNRASIQKWFKAGIMTCSKTRERLISTELFPNTTLKTLIQQFCYDNGISILIAKSHINVTETTVNPGSPAAAHAIHFVSWSLAQRLVFGTDEQKNKAAYEICLLEKSNVFNTACLVEIGTVPPLLDLVLTSTTQENAIAALLKLSKHSNGREVIIGYSLEARRVAAGIIFYLTYVKEYRKLIGENSEIVSGLVKLIKKGTIRGKKNAVLAISGLLYFGVVPAIVKVLNNSGNLNVLGSSDKGYVNVEGARVVLECSGLSLVVGILQSGNSLAEKEYCVYILVSLCVNVGAEVVSVLENYVSVIMPLLYAILTDGTPQAEKKARKLINVLQEFHEKRTLGMMDSSVMQQRLLQWSVLVVCLLL* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3116 392 ProSiteProfiles U-box domain profile. 5 79 IPR003613 GO:0004842|GO:0016567
Mal6g3116 392 SUPERFAMILY RING/U-box 8 78 - -
Mal6g3116 392 SMART Ubox_2 9 72 IPR003613 GO:0004842|GO:0016567
Mal6g3116 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 80 IPR013083 -
Mal6g3116 392 CDD RING-Ubox_PUB 12 52 IPR045210 -
Mal6g3116 392 PANTHER U BOX DOMAIN-CONTAINING 4 368 - -
Mal6g3116 392 Pfam U-box domain 10 76 IPR003613 GO:0004842|GO:0016567
Mal6g3116 392 PANTHER OS07G0532750 PROTEIN 4 368 - -
Mal6g3116 392 Gene3D - 101 388 IPR011989 -
Mal6g3116 392 SUPERFAMILY ARM repeat 118 359 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3116 Mal-Chr6 90491435 90494636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g3116 1 383 U-box Gene Family AT1G10560 35.800 9.03e-64 214