Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3056 ATGCCTTCACTACCTATCATAAACGACACCGTTTCAATCGAAAGCCCTAAATCAAAATCATCAAAGAAGAAAAAGGAAAAGCTTCTTCAAAACGGTGAAAACGGCGTCGTTTCAATGGCTTCAGAGAACGAATCCGCGAAGAAAAGTTCAAAGGAGAGTTCGAAGAAGAGGAAGAAAAATTCAGATGATGATGAAACAAGCTCAGAAGAAGGTTCTAGAAAAGTGAAAAAGGAGAAAAAGAAGAAGAAATCGAAGGTTGAAGAAGAAGTTGTTGAAGAAATTGTTGATGATGAAGAGGTTGTTGTTGTGAAGAAGGATGATCCGAATGCGGTTTCCAATTTCAGAATTTCGGAACCGTTGAAGATGAAATTGAAGGAAAAGGGGATCGAAGCTTTGTTTCCTATTCAAGCTATGACTTTTAATACGATTCTTGATGGGTCTGATTTGGTTGGTCGTGCTCGTACTGGTCAGGGTAAAACTCTGGCATTTGTGTTGCCTATATTAGAGTCCTTGACGAATGGTCCAGCTAAAGGGGTTAGAAAGACTGGCTATGGTAGAGTCCCAAGTGTTCTCGTGCTTTTACCTACAAGGGAATTGGCCAATCAGGTGTACGCTGACTTCGAAGTTTATGGTTCGTCCTTGGGATTGTCTGCTTGCGCTGTATATGGTGGAGCTCCGTATGGTGCTCAGGAGGCTAAGCTCAAGAGAGGTGTTGATATAGTTATTGGAACACCAGGGCGTATTAAGGATCATATTGAGAGGGGAAATATTGACCTGAGCCACCTAAAGTTCCGTGTCCTCGATGAGGCAGATGAGATGCTGAGGATGGGATTTGTTGATGATGTCGAACTCATTCTAGGTAAGGTACAAGATGTTACTAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAAGCTGGGTTAAACAAATTTCTACAAAATTTTTGAAAAAAGAAAAGCAAACTGCTGATCTTGTTGGGAATGAGAAAATGAAGGCTAGCACCAATGTTAGGCATATTATCCTTCCATGTAATAGTACTGCTAGGGCACAGCTTATCCCTGATATTATTCGCTGCTATAGCAGTGGAGGCAGGACAATTATATTTGCGGAGAAAAAGGAGTCTGCTTCTGAGCTAGCTGGATTGTTGCCTGGAGCAAGAGCTCTCCATGGTGACATACAGCAGTCACAACGTGAGATTACATTGAAAGGTTTTAGGTCTGGGAAATTCATGACATTGGTGGCCACCAATGTGGCAGCCAGAGGTCTGGATATTAATGATGTTCAATTGATTATCCAGTGTGAGCCTCCCCGGGATGTAGAAGCATATATTCATCGATCTGGGAGAACAGGAAGAGCTGGTAACACTGGAGTTGCTGTAATGCTTTATGATCCCAGAAGGTCGAATATAGCTAAAATAGAAAGAGAAGCAGGTATAAAATTCGAGCATGTATCTGCTCCTCAGCCTGACGAAATTGCCAAAGCTATTGGTGGGGAAGCTGCTGAAATGATTACTGAAGTGTCTGACAGTGTGATTCCTGCATTCAAATCTGCCGCTGAGGAACTTTTGAACAACTCTGGTTTATCAGCTGTTGAGTTACTTGCAAAAGCTCTTGCCAAGGCTGTTGGTTATACTGAGGTAAAGAAGAGATCACTATTGACTTCGATGGAGGATTATGTTACATTACTTCTCGAGGGAGGAAAACCTATGTTCACCCCATCCTTTGCATTTGGAACTCTGAGGAGATTCATACCTGAGGACAAGGTTGACTTAGTGCAAGGCCTTGCTCTCACTGCAGATGGACAGGGTGCTGTTTTTGATGTACCAGCCAAGGACTTAGATATATTTCTTTCTGGTCAAAAGAACGCTGTTAATGTAAGCCTAAAGGTTGTTAAAGAATTGCCCAGTTTACAACAAAGAGAGGAAGCAAGAGGGAGCAGATTCGGTGGTGGCCGTGGGTTTTCAGGTGGAAGAGGTGGAGGAGGATATAGATTTGGTGGACGAGGTGGTGGAGGTGGAAGAGGTTATGGTGGAGGCAGAGGAGGGGGAAAGAGATGGTAA 2061 0.4304 MPSLPIINDTVSIESPKSKSSKKKKEKLLQNGENGVVSMASENESAKKSSKESSKKRKKNSDDDETSSEEGSRKVKKEKKKKKSKVEEEVVEEIVDDEEVVVVKKDDPNAVSNFRISEPLKMKLKEKGIEALFPIQAMTFNTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKGVRKTGYGRVPSVLVLLPTRELANQVYADFEVYGSSLGLSACAVYGGAPYGAQEAKLKRGVDIVIGTPGRIKDHIERGNIDLSHLKFRVLDEADEMLRMGFVDDVELILGKVQDVTKVQTLLFSATLPSWVKQISTKFLKKEKQTADLVGNEKMKASTNVRHIILPCNSTARAQLIPDIIRCYSSGGRTIIFAEKKESASELAGLLPGARALHGDIQQSQREITLKGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNIAKIEREAGIKFEHVSAPQPDEIAKAIGGEAAEMITEVSDSVIPAFKSAAEELLNNSGLSAVELLAKALAKAVGYTEVKKRSLLTSMEDYVTLLLEGGKPMFTPSFAFGTLRRFIPEDKVDLVQGLALTADGQGAVFDVPAKDLDIFLSGQKNAVNVSLKVVKELPSLQQREEARGSRFGGGRGFSGGRGGGGYRFGGRGGGGGRGYGGGRGGGKRW* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3056 686 CDD GUCT_RH7_like 550 635 - -
Mal6g3056 686 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 289 IPR027417 -
Mal6g3056 686 CDD SF2_C_DEAD 337 463 - -
Mal6g3056 686 MobiDBLite consensus disorder prediction 1 15 - -
Mal6g3056 686 Gene3D - 318 559 IPR027417 -
Mal6g3056 686 Pfam Helicase conserved C-terminal domain 355 454 IPR001650 -
Mal6g3056 686 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 266 274 IPR000629 -
Mal6g3056 686 Gene3D - 17 317 IPR027417 -
Mal6g3056 686 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 467 IPR027417 -
Mal6g3056 686 SMART ultradead3 128 340 IPR014001 -
Mal6g3056 686 MobiDBLite consensus disorder prediction 16 30 - -
Mal6g3056 686 SMART helicmild6 377 454 IPR001650 -
Mal6g3056 686 Gene3D - 560 633 - -
Mal6g3056 686 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 32 672 - -
Mal6g3056 686 MobiDBLite consensus disorder prediction 1 88 - -
Mal6g3056 686 Pfam GUCT (NUC152) domain 543 638 IPR012562 GO:0003723|GO:0004386|GO:0005524
Mal6g3056 686 CDD DEADc 120 317 - -
Mal6g3056 686 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 32 672 - -
Mal6g3056 686 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 351 493 IPR001650 -
Mal6g3056 686 MobiDBLite consensus disorder prediction 45 75 - -
Mal6g3056 686 Pfam DEAD/DEAH box helicase 133 310 IPR011545 GO:0003676|GO:0005524
Mal6g3056 686 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 140 322 IPR014001 -
Mal6g3056 686 SUPERFAMILY RNA-binding domain, RBD 548 630 IPR035979 GO:0003676
Mal6g3056 686 MobiDBLite consensus disorder prediction 641 686 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3056 Mal-Chr6 86710440 86715555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g3056 95 492 Eukaryotic Initiation Factors Gene Family AT3G19760 29.512 2.83e-43 159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g3056 6 86710440 86715555 Mal6g3056 6 86710440 86715555 ECH