Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3034 ATGGATGAAAACAAGAAGTGGATGCATAAAGAGACAGAAAGACAAAGAAGGCAAGAGATGGCCAACCTCTGCACCAACCTTAGATCTCTTCTGCCTTTAGAATATATTAAGGGAAAACGCTCAATTTCTGATCATGTGAATGAGGCTATGAATTATATCAACCACCTACAAAAGAAGGTACATCAATTACAAGCTAAGAAGGAAGACTTAATCAAGGTGTCTAATTTGAGTACAAATGTGCCTCAAAATGGCTCTAGTAGTAGCACCAATATTCAACCCTTTGTTCTTGTTCAATCATTCCCTGGAGGACTTGAGATTGTGTGCAGTTATAGCATCAACAAGTGTTTGTTTCCTTTGTCAAGGGTCCTAGACATGCTGCTTAAAGAAGGGCTTAATGTGATAAGTAGTACTTCCAACAAAATTGATGGAAGATTTATATACACCATACGATCGGAGGAACCGGTAATGACTGGCATTGATTACTCTGAACTGCAAAGAAAGCTCACCCAAGCAATATCAGCTTCAAGGTTACAAGAAAGTTCGTCTGAACCATGGTATTGA 561 0.3886 MDENKKWMHKETERQRRQEMANLCTNLRSLLPLEYIKGKRSISDHVNEAMNYINHLQKKVHQLQAKKEDLIKVSNLSTNVPQNGSSSSTNIQPFVLVQSFPGGLEIVCSYSINKCLFPLSRVLDMLLKEGLNVISSTSNKIDGRFIYTIRSEEPVMTGIDYSELQRKLTQAISASRLQESSSEPWY* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3034 186 SMART finulus 10 62 IPR011598 GO:0046983
Mal6g3034 186 Pfam Helix-loop-helix DNA-binding domain 6 57 IPR011598 GO:0046983
Mal6g3034 186 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 72 IPR036638 GO:0046983
Mal6g3034 186 CDD bHLH_AtORG2_like 5 79 - -
Mal6g3034 186 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 178 IPR015660 GO:0003700|GO:0006357
Mal6g3034 186 Coils Coil 46 73 - -
Mal6g3034 186 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 56 IPR011598 GO:0046983
Mal6g3034 186 Gene3D - 1 83 IPR036638 GO:0046983
Mal6g3034 186 PANTHER TRANSCRIPTION FACTOR 1 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3034 Mal-Chr6 85311695 85313656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g3034 2 170 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 41.954 1.28e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal6g3034 HLH 6.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3034 - - gsj:114390355 253.062