Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3013 ATGGGGAGAGGAAGAGTAGTGTTGGAGAGAATAGAGAATAAGATCAATAGGCAAGTAACATTCTCAAAGAGAAGGAGTGGATTGTTGAAGAAAGCCTTTGAGCTTTGTGTTCTTTGTGATGCTGAAGTAGCACTTATCATCTTTTCAAGCCGTGGCAAGCTTTTCCAATACAGTAGCACTGATATTAACAAAATCATTGAAAGGTATCGGCAATGTTGTTACAACAAATCACAATCTGGCAATTCATTTGGACAAAATGAATCACAGAATTCATACCAGGACTACTTAAAATTAAAGGCTAAATATGAGTCTCTTGACCGCAAGCAGAGGCATTTCCATGGGGAAGAACTCGACGAACTTAGCATGAAAGAATTGCAAAGACTTGAGGAACAACTAGACTCAACACTCACACAAGCTCGTCAGCAACAAATGAAGAAGCTCTTGGCACGAACTGAGGAATTACGTGAAAAGGTGCATAACTTGGAGGAGCTTAACAAAATATTGGAGCACAAGGCAATAGATGAAATCTCAAACTTTGCTGACAAAACAAGTCATATTCAATTGCACGATATACAATAA 579 0.3851 MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELCVLCDAEVALIIFSSRGKLFQYSSTDINKIIERYRQCCYNKSQSGNSFGQNESQNSYQDYLKLKAKYESLDRKQRHFHGEELDELSMKELQRLEEQLDSTLTQARQQQMKKLLARTEELREKVHNLEELNKILEHKAIDEISNFADKTSHIQLHDIQ* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3013 192 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal6g3013 192 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 178 - -
Mal6g3013 192 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Mal6g3013 192 PANTHER MADS BOX PROTEIN 1 178 - -
Mal6g3013 192 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal6g3013 192 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal6g3013 192 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal6g3013 192 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal6g3013 192 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Mal6g3013 192 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mal6g3013 192 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mal6g3013 192 ProSiteProfiles K-box domain profile. 88 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal6g3013 192 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Mal6g3013 192 Coils Coil 122 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3013 Mal-Chr6 84025138 84028785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g3013 1 171 MADS-box Gene Family AT2G45650 56.725 3.32e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mal6g3013 K-box 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3013 K09264 - gmx:100779279 263.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g3013 6 84025138 84028785 Mal6g3013 6 84025138 84028785 ECH