Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3003 ATGCAATATTTTCTCAAGACTCGAAATTGTTTTAAGTTCAGATTCGGTAAATTTAGAAACGGTGGAAGTTGTAAGTATGCTCATGGGGTTGATGAGTTACGGCAACCACTACCAAATTTGCAGGAACTAGTTGGTCCGCGAAACGAAGATCAGCTGCAATTGGGAAATAGGGCTGAAGATAAAAAAATTATACACAAGATGAAGCTATGCAAGAAGTATTGCAATGGAGAGGAATGTCCCTATGGAGATAAGTGCAGATTTCTTCATGAAGATCTTGCACAGTTTAGGGATGGTTCTTGGAAATCAAGAGAGTGA 315 0.3905 MQYFLKTRNCFKFRFGKFRNGGSCKYAHGVDELRQPLPNLQELVGPRNEDQLQLGNRAEDKKIIHKMKLCKKYCNGEECPYGDKCRFLHEDLAQFRDGSWKSRE* 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3003 104 Gene3D - 3 94 - -
Mal6g3003 104 ProSiteProfiles Zinc finger C3H1-type profile. 4 31 IPR000571 GO:0046872
Mal6g3003 104 ProSiteProfiles Zinc finger C3H1-type profile. 64 92 IPR000571 GO:0046872
Mal6g3003 104 SUPERFAMILY CCCH zinc finger 3 35 IPR036855 GO:0046872
Mal6g3003 104 SUPERFAMILY CCCH zinc finger 63 90 IPR036855 GO:0046872
Mal6g3003 104 Pfam CCCH-type zinc finger 68 89 IPR041367 -
Mal6g3003 104 PANTHER CCCH ZINC FINGER/TIS11-RELATED 3 96 IPR045877 GO:0003729
Mal6g3003 104 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 3 96 - -
Mal6g3003 104 SMART c3hfinal6 64 91 IPR000571 GO:0046872
Mal6g3003 104 SMART c3hfinal6 4 30 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3003 Mal-Chr6 83584137 83584451 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal6g3003 zf-CCCH_4 2.2e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3003 - - mtr:MTR_4g113970 139.043