Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3002 ATGACTTTTCCAGATGATATTCCTACCTGTAAGATATCACCACTGCAATTCGCTTCATTGAACAACAAGGACTTTGAATCAGATTCAACATTGGATCATCACCATTACTTCAGTAAGGAAAGATCTTTTCATTCCAATGCATTCATAAGCCCTCCTTCTGATGAATTGATATCCCCTCCTTCAAGGATGACCATGCCTCCATCAAACAGAGCAGGCGATATTTTCTACAAGACTCGAATTTGTTTTAAGTTCAAATTCGGTAAATGTAGGAACAGTTTAAGTTGTAACTATGCTCATAGGTTTGATGAGTTACGACAGCCACTACAAAATTTGAAGGAGCTAGTTGGTCCGCAGAACGAAGATCAGCTTCAGTTGGGAAATAGGGATGAAGATAAAAAAGAAAACATACACAAGATGAAGCTATGCAAGAAGTATTACAATGGATAG 447 0.3781 MTFPDDIPTCKISPLQFASLNNKDFESDSTLDHHHYFSKERSFHSNAFISPPSDELISPPSRMTMPPSNRAGDIFYKTRICFKFKFGKCRNSLSCNYAHRFDELRQPLQNLKELVGPQNEDQLQLGNRDEDKKENIHKMKLCKKYYNG* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3002 148 Gene3D - 71 106 - -
Mal6g3002 148 ProSiteProfiles Zinc finger C3H1-type profile. 75 102 IPR000571 GO:0046872
Mal6g3002 148 PANTHER CCCH ZINC FINGER/TIS11-RELATED 17 148 IPR045877 GO:0003729
Mal6g3002 148 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 17 148 - -
Mal6g3002 148 SUPERFAMILY CCCH zinc finger 74 106 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3002 Mal-Chr6 83582985 83583431 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal6g3002 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3002 - - mtr:MTR_4g113890 160.229