Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3001 ATGGCTTTTCCTGATGATATTCCTACCTATAAGATAAACGATGGAAGTTGTAAGTATGCTCATGGGGTTGATGAGTTACGACATCCACTACCAAATTTGCAGGAACTAGTTGGTCCGCGAAACAAAGATCAACAACAGTTGGGAAATAGGGCTGAAGATAAAAAAATTATACACAAGATGAAGCTATGCAAGAAGTATTGCAATGGAGAGGAATGTCCCTATGGAGATAAGTTCAGATTTCTTCATGAAGATCTTGCACAGTTTAGGGATGGTTCATGGAAATCAAGAGAGTGA 294 0.3878 MAFPDDIPTYKINDGSCKYAHGVDELRHPLPNLQELVGPRNKDQQQLGNRAEDKKIIHKMKLCKKYCNGEECPYGDKFRFLHEDLAQFRDGSWKSRE* 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3001 97 ProSiteProfiles Zinc finger C3H1-type profile. 57 85 IPR000571 GO:0046872
Mal6g3001 97 Gene3D - 11 87 - -
Mal6g3001 97 PANTHER CCCH ZINC FINGER/TIS11-RELATED 14 89 IPR045877 GO:0003729
Mal6g3001 97 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 14 89 - -
Mal6g3001 97 SUPERFAMILY CCCH zinc finger 57 83 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g3001 Mal-Chr6 83559786 83560312 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal6g3001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3001 - - mtr:MTR_4g113970 115.931