Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g3000 ATGGATTTTCCAAATGATATTCCTACTTATTCAGCATTGGATCATCCTCATTCCTTCAGTTGGGAAATAACTTCTCATTCCAATGCATTGATACGCCCTCCTTCCAATGTGTTGATATCTCCTCCTTCAAGGATGATCCTGCCTCTATCAAACAAAGCAGACAATATTTTCTCAAGACTCGATTTTGTTTTAAATTCAGATTCGGTAAATGTAGGAACGGTGGAAGTTGTAATTATGCTCATGGATCTTGCACAGTTTAGGGATGGTTCATGGAAATCAAGAGAGTGCTCCGCAATAACCATTGTAACTATTGTTTCTAACAATAAGGCTATGAACAAGCAAGCAAGGGGCATTTATTGGAAGAATGAGCTGTGTCGCAAGTGGCAGCTTACAGGATATTGTCCCTTTGAAAAGAACTGTATCTTTGCTCATGGAGAAGCAGGGCATCTTCGAAGCTCTGATCCAGACCCCGCAAACCAAGTTTAA 486 0.4033 MDFPNDIPTYSALDHPHSFSWEITSHSNALIRPPSNVLISPPSRMILPLSNKADNIFSRLDFVLNSDSVNVGTVEVVIMLMDLAQFRDGSWKSRECSAITIVTIVSNNKAMNKQARGIYWKNELCRKWQLTGYCPFEKNCIFAHGEAGHLRSSDPDPANQV* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g3000 161 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 120 146 IPR000571 GO:0046872
Mal6g3000 161 Gene3D - 112 152 - -
Mal6g3000 161 ProSiteProfiles Zinc finger C3H1-type profile. 119 147 IPR000571 GO:0046872
Mal6g3000 161 SUPERFAMILY CCCH zinc finger 118 147 IPR036855 GO:0046872
Mal6g3000 161 SMART c3hfinal6 120 146 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g3000 121 145 C3H Transcription Factor Family AT1G68200 64.000 6.01e-06 43.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal6g3000 zf-CCCH 6.2e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g3000 - - mtr:MTR_4g113970 85.5001