Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2990 ATGGCTTTTCCACATGATATTCCTACCTCTAAGATATCACCGCCGCAATTCGCTTCATTGAACAACAATGACTTTGAATCGGATTCAACATTGGATCAATCCACTTCCTTCAGTAGGGAAAAAACTTTTCATTCCAATGCATTCATATGCCCTCCTTCCAATGCATTGATATCCCCTCCTTCAAGGATGACCCAAACTCCATCAAACAGAGCAGACAATATTTTCTACAAGACTCAAATTTGTTTTAAGTTCAGATTCGGTAAATCTAGGAACGATGGAAGTCGTAACTATGCTCATGGGCTTGATGAGTTACGGCAGCCACAACCAAATTTGCAGGAGCTATTGGGAAATAAGGATGAAGATAAAAAAAACATACACCAGATGAAGCTATGCAAGAAGTATTGCAATGGAGAGGAATGTCCCTATCGAGATAAGGGAATTTATTGGAAGACTGAGCTCTGTCGCAACTGGCAGCTTACAGGATATTGTCCCTTTGGAAAAAATTGTATCTTTTCTCATGGAGAAGCAAGTAGGAATATCATCTGGAAAAGCCATGGTTGTTGTCAAAGGATTATTTTTTTTATTTTTTTTTTGATAAAGTTCAGTGAAATTTTGAGACCTTTCCACCAGATTATTATTCAAGTTTAA 648 0.3765 MAFPHDIPTSKISPPQFASLNNNDFESDSTLDQSTSFSREKTFHSNAFICPPSNALISPPSRMTQTPSNRADNIFYKTQICFKFRFGKSRNDGSRNYAHGLDELRQPQPNLQELLGNKDEDKKNIHQMKLCKKYCNGEECPYRDKGIYWKTELCRNWQLTGYCPFGKNCIFSHGEASRNIIWKSHGCCQRIIFFIFFLIKFSEILRPFHQIIIQV* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2990 215 SUPERFAMILY CCCH zinc finger 147 176 IPR036855 GO:0046872
Mal6g2990 215 PANTHER CCCH ZINC FINGER/TIS11-RELATED 146 177 IPR045877 GO:0003729
Mal6g2990 215 MobiDBLite consensus disorder prediction 1 36 - -
Mal6g2990 215 Gene3D - 146 179 - -
Mal6g2990 215 ProSiteProfiles Zinc finger C3H1-type profile. 148 176 IPR000571 GO:0046872
Mal6g2990 215 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 146 177 - -
Mal6g2990 215 SMART c3hfinal6 148 175 IPR000571 GO:0046872
Mal6g2990 215 SMART c3hfinal6 75 101 IPR000571 GO:0046872
Mal6g2990 215 MobiDBLite consensus disorder prediction 12 36 - -
Mal6g2990 215 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 149 175 IPR000571 GO:0046872
Mal6g2990 215 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 17 145 - -
Mal6g2990 215 PANTHER CCCH ZINC FINGER/TIS11-RELATED 17 145 IPR045877 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2990 Mal-Chr6 82784644 82786041 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2990 150 174 C3H Transcription Factor Family AT1G68200 64.000 8.96e-06 43.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal6g2990 zf-CCCH 7.7e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2990 - - mtr:MTR_4g113890 227.254