Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2971 ATGATTAAGAAAGTAAAGAGCTACCCAACTGCAAGTAACAAGCCTGAAAAAGAGACGAAGCAACAACCCAAATCAAACATGCCAGCACACACGAAAATGCATAGTGACAAGTTAATGAAGCTCAAAACCAAATCACTAACAGGTCCAGGTTCTAGAGCTCATCAACCAATGGTTGGTGAGATTATCAGCAGGTTTGAGAAGAAGGGTTTCTACTTGAAAGAGCGATTAGATCAAGACACAAGTGGAATTCTTACAACCATATGCAATCATTCTTTCCATTGTGCCTGTATTTCAAAATGGGCAGATTATTCTTGTCTTTACTATGCCCCTGCTTACATTTTTAGGTATGCCACTATTGCCAACAGCAGGCTGAAAATTCTATATGTTTCGTTTGTCAAACCACTGAGAACCTTTGGATATGTGTTATATGTGGGTTTGTTGGCTGTGGAAGGAGGGCATGCCATAATACACTGGAAAGAGACGCAACACTGCTATTCCTTGGAAGTGGAAACCAAGCGTGTCTGGGATTATGTGGGAGACAACTATGTTCATAGACTTATTCAGTCCAAAACTGATGGGAAGTTAGTTGAGCTGAACTCTCACTGTGTGCATGCAGAGAGTGGATGTGGCAGCTGTGGAGATAATGCCATGAGAGACGCTATACTTAATAGTAAAGTCGAAGCTATTGTCAATGAGTACAATGAATTGCTTGCTACTCAACTTGAAAACCAAAAATTGTATTTTGAATCCTTATTACAACAAGTAGAACAAGAAACGGAAGGGAAAATTTCCGTAGCTGTTCAGAAGGCTCTTAATGACAACCTTTTGAAAAATGAGATCAGGAAAGCCAAGTTACTTGAGATTGAAGAGAGGTTGTTGATTTATGAGTATGTTACCAATGGAAATTTAGAGCAATGGCTTCATGGTGCCATGCGGCAATATGGTTTTCTTACATGGGATGCTCGGATTAAAATTTTTCTTGGAACAGCTAAAGCGTATGATCATTTAGCACATCTCACTGATTGGTTTTACTAG 1035 0.3952 MIKKVKSYPTASNKPEKETKQQPKSNMPAHTKMHSDKLMKLKTKSLTGPGSRAHQPMVGEIISRFEKKGFYLKERLDQDTSGILTTICNHSFHCACISKWADYSCLYYAPAYIFRYATIANSRLKILYVSFVKPLRTFGYVLYVGLLAVEGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNSHCVHAESGCGSCGDNAMRDAILNSKVEAIVNEYNELLATQLENQKLYFESLLQQVEQETEGKISVAVQKALNDNLLKNEIRKAKLLEIEERLLIYEYVTNGNLEQWLHGAMRQYGFLTWDARIKIFLGTAKAYDHLAHLTDWFY* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2971 344 Coils Coil 238 258 - -
Mal6g2971 344 Pfam Zn-finger in ubiquitin-hydrolases and other protein 151 185 IPR001607 GO:0008270
Mal6g2971 344 SUPERFAMILY RING/U-box 83 104 - -
Mal6g2971 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 203 IPR013083 -
Mal6g2971 344 CDD RING-H2_BRAP2 74 105 - -
Mal6g2971 344 SUPERFAMILY Protein kinase-like (PK-like) 290 337 IPR011009 -
Mal6g2971 344 SUPERFAMILY RING/U-box 151 196 - -
Mal6g2971 344 Gene3D Transferase(Phosphotransferase) domain 1 252 341 - -
Mal6g2971 344 MobiDBLite consensus disorder prediction 1 34 - -
Mal6g2971 344 ProSiteProfiles Zinc finger UBP-type profile. 89 202 IPR001607 GO:0008270
Mal6g2971 344 PANTHER BRCA1-ASSOCIATED PROTEIN 74 105 - -
Mal6g2971 344 PANTHER BRCA1-ASSOCIATED PROTEIN 149 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2971 Mal-Chr6 81725431 81731326 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2971 290 336 Strubbelig Receptor Gene Family AT4G22130 55.319 8.75e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2971 K10632 - gmx:100794688 277.33