Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2966 ATGGATTTCGACGGTGGTAATAAGCGGGTTTATAACCGACTAGGTGGTTCCAACGGTGGTGATGCAAAGAATCAGAAAGTGTGTTTTCAATGGCAAGCAGGAAAGTGTAATCGTTACCCATGTCCTTTTCTGCATAGTGAGCTACCTACTTCAAATGGGAATGGTGCTCCTTCAAAGCGGGCTTATGCTGATAATTCGGGTTTTTCGGGTAACCGGCGTGGTGGTGGATCGAGTTTTAATTCGTGGGGGCCGGGGAGAGGTGGTGGACGTGGTCGTGGTGGGGGGAGGGGTGGTGTAGGTGGTGGAGGTGGTAGGGGAGTTGTTGTGAATGTTGAAAGAGTTTGCAATTATTGGATTCAAGGGAGTTGTAGTTTTGGAGATAGGTGTAAGTTTCTTCACTCTTGGAATGTTGGGGATGGTTTTTCTTTGTTGACTCAGCTTGAAGGACATAAGAAGGTTGTGAGTGGAATTGCTATGCCCTCTGGGTCGGATAAGCTTTATACTGGAAGTACTGATGAGTCTGTAAGGGTTTGGGACTGCCAGTCTGGACAGTGTATAGCGGTGATCAATCTTGGTGGTGAAGTTGGTTGTATGATCAGTGAAGGTCCCTGGCTTTTTGTTGGCATACCCAATTTTGTTAAGGCATGGAACACACAAAATTCGATGGAGATAAGTTTAGATGGCCCTGTCGGACAAGTTTATGCACTTGTTGTGATTAATGATATGCTCTTTGCTGGTACGCAGGATGGAGCTATATTGGTATGGAAATTTAATGTAGCTGCCAACTGTTTTGAGCCAGCTGCATCACTTAAAGGTCATACCCGTGGTGTTGTTTCGTTAGTTGTTGGAGCTAATAGACTTTATTCTGGTTCAATGGACAATACAATTAGAGTGTGGAACCTTGAAACCTTGCAGTGTTTACAGACACTAACAGAGCACACATCTGTTGTGATGTCTGTTCTTTGCTGGGATCAGTTTCTTATATCTTGTTCATTAGACAAAACAGTGAAGGTATGGTATGCTACAGAAAGTGGAAATTTGGAAGTGACATATACTCACACTGAAGAACATGGTATAATCACCCTTTGTGGGATGCATGATTCACAAGGCAAGCCCATACTTCTGTGCTCTTGCAATGATAATACTGTTCGCCTCTATGATCTGCCATCATTTGCAGAGAGAGGTAAGATATTCAACAAACAAGAGGTGCGAGCAATTCAGACTGGTCCTGGTAGCATATTCTTCACTGGTGATGGAACCGGCCAAGTGAGAGTGTGGAATTGGATACCAGAACCGGCCACGTCCAACAATGTCCTATAA 1320 0.4432 MDFDGGNKRVYNRLGGSNGGDAKNQKVCFQWQAGKCNRYPCPFLHSELPTSNGNGAPSKRAYADNSGFSGNRRGGGSSFNSWGPGRGGGRGRGGGRGGVGGGGGRGVVVNVERVCNYWIQGSCSFGDRCKFLHSWNVGDGFSLLTQLEGHKKVVSGIAMPSGSDKLYTGSTDESVRVWDCQSGQCIAVINLGGEVGCMISEGPWLFVGIPNFVKAWNTQNSMEISLDGPVGQVYALVVINDMLFAGTQDGAILVWKFNVAANCFEPAASLKGHTRGVVSLVVGANRLYSGSMDNTIRVWNLETLQCLQTLTEHTSVVMSVLCWDQFLISCSLDKTVKVWYATESGNLEVTYTHTEEHGIITLCGMHDSQGKPILLCSCNDNTVRLYDLPSFAERGKIFNKQEVRAIQTGPGSIFFTGDGTGQVRVWNWIPEPATSNNVL* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2966 439 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Mal6g2966 439 PRINTS G protein beta WD-40 repeat signature 327 341 IPR020472 -
Mal6g2966 439 PRINTS G protein beta WD-40 repeat signature 287 301 IPR020472 -
Mal6g2966 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 147 179 - -
Mal6g2966 439 SMART c3hfinal6 110 135 IPR000571 GO:0046872
Mal6g2966 439 SMART c3hfinal6 23 47 IPR000571 GO:0046872
Mal6g2966 439 SMART WD40_4 219 256 IPR001680 GO:0005515
Mal6g2966 439 SMART WD40_4 263 300 IPR001680 GO:0005515
Mal6g2966 439 SMART WD40_4 344 387 IPR001680 GO:0005515
Mal6g2966 439 SMART WD40_4 390 427 IPR001680 GO:0005515
Mal6g2966 439 SMART WD40_4 140 179 IPR001680 GO:0005515
Mal6g2966 439 SMART WD40_4 303 340 IPR001680 GO:0005515
Mal6g2966 439 ProSiteProfiles Zinc finger C3H1-type profile. 114 136 IPR000571 GO:0046872
Mal6g2966 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 147 188 IPR001680 GO:0005515
Mal6g2966 439 Pfam CCCH-type zinc finger 113 133 IPR041367 -
Mal6g2966 439 SUPERFAMILY WD40 repeat-like 131 429 IPR036322 GO:0005515
Mal6g2966 439 Pfam WD domain, G-beta repeat 143 179 IPR001680 GO:0005515
Mal6g2966 439 Pfam WD domain, G-beta repeat 267 300 IPR001680 GO:0005515
Mal6g2966 439 Pfam WD domain, G-beta repeat 305 339 IPR001680 GO:0005515
Mal6g2966 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 309 IPR001680 GO:0005515
Mal6g2966 439 Gene3D - 122 224 IPR015943 GO:0005515
Mal6g2966 439 SUPERFAMILY CCCH zinc finger 112 134 IPR036855 GO:0046872
Mal6g2966 439 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 434 - -
Mal6g2966 439 ProSiteProfiles Zinc finger C3H1-type profile. 22 48 IPR000571 GO:0046872
Mal6g2966 439 PANTHER - 1 434 IPR044715 -
Mal6g2966 439 MobiDBLite consensus disorder prediction 52 102 - -
Mal6g2966 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 270 303 - -
Mal6g2966 439 Gene3D - 226 437 IPR015943 GO:0005515
Mal6g2966 439 ProSitePatterns Trp-Asp (WD) repeats signature. 287 301 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2966 Mal-Chr6 81202961 81208429 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2966 144 311 Eukaryotic Initiation Factors Gene Family AT2G46290 24.211 6.75e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal6g2966 WD40 0.0012 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2966 - - mtr:MTR_6g465150 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g2966 6 81202961 81208429 Mal6g2966 6 81202961 81208429 ECH