Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2959 ATGATTACTACTAACAACTCTTCCTATTCACACTCCATTTTCTCAAAAGCATCTTCTTCCTACGACACATCATCACCGGATTCGGAGGTACGATTAGCGGCTAGTAACCCGAAGAAGCGAGCAGGGAGGAAGATATTCAAGGAAACTCGCCACCCGGTGTATAGGGGTGTGAGGAAAAGGAACTTAGATAAATGGGTTTGTGAAATGAGGGAGCCCAACAAAAAGACTAGGATTTGGCTAGGGACTTATCCAACAGCCGAGATGGCAGCCCGAGCCCATGATGTGGCTGCCATGGCATTGAGAGGCCGCTACGCCTGTCTCAATTTCGCAGACTCGGTGTGGCGGCTCCCTATTCCAGCAACCTCCAATATAAAAGATATTCAAAAGGCGGCTGCTGAAGCCGCCGAAGCTTTTAGACCAGACAAGACTTTAATGACTAACGATATTGACACGGTCGTAGCTGTCATCGCCACAAAGGAGCTGAATATTTTTTGTGTGGAAGTTGAAGAAGAGGATGAAGTGTTGAACATGCCAGAGTTGTGGAGGAATATGGCGCTAATGTCCCCTACACATAGCTTTGGGTATGATGATCAATATGAAGATATTCATGTACAAGACTTTCAAGATGATGACGAGGACTTTAAAAAAAGGACTATTACAATGAGTTGGGTTGTGACTGCAATTGGAGTTTGTTCGCCGCGTTTCACCGTAATATCAAGGATTGTGATCGTCGGGTTGACTCCGAACCCTGCTTTTCTATGTCTGGTTTCTTTGTTTTCTTCTTGA 786 0.4529 MITTNNSSYSHSIFSKASSSYDTSSPDSEVRLAASNPKKRAGRKIFKETRHPVYRGVRKRNLDKWVCEMREPNKKTRIWLGTYPTAEMAARAHDVAAMALRGRYACLNFADSVWRLPIPATSNIKDIQKAAAEAAEAFRPDKTLMTNDIDTVVAVIATKELNIFCVEVEEEDEVLNMPELWRNMALMSPTHSFGYDDQYEDIHVQDFQDDDEDFKKRTITMSWVVTAIGVCSPRFTVISRIVIVGLTPNPAFLCLVSLFSS* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2959 261 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Mal6g2959 261 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 1 225 - -
Mal6g2959 261 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Mal6g2959 261 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700|GO:0006355
Mal6g2959 261 MobiDBLite consensus disorder prediction 17 31 - -
Mal6g2959 261 CDD AP2 54 112 IPR001471 GO:0003700|GO:0006355
Mal6g2959 261 SUPERFAMILY DNA-binding domain 53 112 IPR016177 GO:0003677
Mal6g2959 261 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Mal6g2959 261 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Mal6g2959 261 MobiDBLite consensus disorder prediction 17 44 - -
Mal6g2959 261 Pfam AP2 domain 52 102 IPR001471 GO:0003700|GO:0006355
Mal6g2959 261 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 225 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2959 Mal-Chr6 80866097 80867251 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2959 5 196 AP2-EREBP Transcription Factor Family AT4G25470 53.960 6.36e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mal6g2959 AP2 6.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2959 - K09286 mtr:MTR_6g465460 394.43