Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2954 ATGTCTTATAGTAACAACTCTTCACACTCCAAAGCTTCCTCTTCCTGTGACATGTCTTTGCCGAATTTACATGGCTTCCATGGGATATCAGATTTCAACGAGGACATGCGGTTAGCGGCGAGTTGCCCGAAGAGGCGTGCAGGGAGGAAAATATTCAAGGAAACTCGCCACCCGGTATACAGGGGTGTGAGGAAGAGGAATTTAGATAAATGGGTTTGTGAAATGAGGGAGCCTAACAAGAAGACTAAGATTTGGCTAGGAACTTTTCCAACGGCTGAGATGGCAGCCCGTGCCCACGATGTTGCTGCAATGGCATTGAGGGGCCGCTACGCCTGTCTCAACTTTGCAGACTCTGCGTGGCGGCTCCCTAAACCTACCACCACCCAGGCAAAAGATATTCAAAAGGCGGCAGCAGAAGCCGCCGAGGCTTTTAGACCAGACAATATTTTAAAGACGGATGATGTTGGCACCGTTTTCACTGTCTCTACTGAGGAGGAGTTGAGTATGTTTTCTATGGAAGAGGAGGAAGTTTTGAATATGGAGTTGTTGAGGAATATGGTGCTAATGTCACCTACACATAGCTTGGAACATGAGAATGATGATATTTATGTAGAAGACTTTCAAGATGATGAGGTATCACTATGGAACTTTTAA 654 0.4602 MSYSNNSSHSKASSSCDMSLPNLHGFHGISDFNEDMRLAASCPKRRAGRKIFKETRHPVYRGVRKRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVAAMALRGRYACLNFADSAWRLPKPTTTQAKDIQKAAAEAAEAFRPDNILKTDDVGTVFTVSTEEELSMFSMEEEEVLNMELLRNMVLMSPTHSLEHENDDIYVEDFQDDEVSLWNF* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2954 217 ProSiteProfiles AP2/ERF domain profile. 59 116 IPR001471 GO:0003700|GO:0006355
Mal6g2954 217 SMART rav1_2 59 122 IPR001471 GO:0003700|GO:0006355
Mal6g2954 217 PRINTS Ethylene responsive element binding protein signature 82 98 IPR001471 GO:0003700|GO:0006355
Mal6g2954 217 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Mal6g2954 217 Pfam AP2 domain 58 108 IPR001471 GO:0003700|GO:0006355
Mal6g2954 217 Gene3D AP2/ERF domain 59 117 IPR036955 GO:0003700|GO:0006355
Mal6g2954 217 CDD AP2 60 118 IPR001471 GO:0003700|GO:0006355
Mal6g2954 217 SUPERFAMILY DNA-binding domain 59 118 IPR016177 GO:0003677
Mal6g2954 217 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 4 217 IPR045277 GO:0003700
Mal6g2954 217 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 4 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2954 Mal-Chr6 80754892 80755545 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2954 37 217 AP2-EREBP Transcription Factor Family AT4G25470 57.216 2.87e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal6g2954 AP2 2.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2954 - K09286 gmx:547622 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1990 1 26135160 26138002 Mal6g2954 6 80754892 80755545 ECH
Mal6g2954 6 80754892 80755545 Mal6g2954 6 80754892 80755545 ECH