Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2953 ATGTTTACTAGTAACAAATGGGAGGTGCGGTTAGCAGCAAGTTGCCCGAAAAAACCAGCAGGGAGGAAGAAGTTTAAGGAGACTCGCCACCCGGTGTATAGGGGTGTGAGGAGTAGGAACTTAGATAAATGGGTGTGTGAAATGAGGGAGCCTAATAAGAAGACTAGGATTTGGCTAGGGACTTTTCCAACAGCCGAGATGGCAGCCCGAGCCCACGATGTTGCCGCAATGGCATTGAGGGGCCGCTACGCCTGTCTCAATTTTGCAGACTCGGTGTGGAGGCTCCCTATTCCTGCCACCGCCGAGACAAAAGATATTCAAAGAGCGGCTGCAGAAGCTGCCGAGGCTTTCAGACCAGACAAAACTGTAATGACTAACGACATTGACACGGTTGTGGCTGTCGTCGTCACAGAGGAGCTGAGTATGTTTTGTGTTGAAGTGAAAGAAGAGGAAGAAGTGTTGAATATGCCAGAGTTGTGGAGGAATATGGCGCTAATGTCCCCAACACATAGCTTTGGGTATCATGATCAGTATGAAGATATTAATGTACAAGATTTTCAAGATGAAGAGGCTCTTTCAATAAAAAAAAACAAAAAAAAAAAAGTCATTTGA 612 0.4592 MFTSNKWEVRLAASCPKKPAGRKKFKETRHPVYRGVRSRNLDKWVCEMREPNKKTRIWLGTFPTAEMAARAHDVAAMALRGRYACLNFADSVWRLPIPATAETKDIQRAAAEAAEAFRPDKTVMTNDIDTVVAVVVTEELSMFCVEVKEEEEVLNMPELWRNMALMSPTHSFGYHDQYEDINVQDFQDEEALSIKKNKKKKVI* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2953 203 Pfam AP2 domain 31 81 IPR001471 GO:0003700|GO:0006355
Mal6g2953 203 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Mal6g2953 203 Gene3D AP2/ERF domain 32 90 IPR036955 GO:0003700|GO:0006355
Mal6g2953 203 SUPERFAMILY DNA-binding domain 32 91 IPR016177 GO:0003677
Mal6g2953 203 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 4 194 IPR045277 GO:0003700
Mal6g2953 203 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Mal6g2953 203 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Mal6g2953 203 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 4 194 - -
Mal6g2953 203 CDD AP2 33 91 IPR001471 GO:0003700|GO:0006355
Mal6g2953 203 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2953 Mal-Chr6 80690701 80691903 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2953 3 175 AP2-EREBP Transcription Factor Family AT4G25470 57.923 6.12e-66 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mal6g2953 AP2 4.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2953 - - mtr:MTR_6g465460 303.908