Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2950 ATGTTTACAACTAACAACTCTTCCTATTCAGACCCCATTTCCTCTCAGGGCTCTCATGGGATGTCATTATCCCACAAGGAGATGCGTTTAGCGGCGAGTTGCCCAAAGAAGCGTGCAGGGAGGAAGAAGTTTAAGGAGACTCGCCACCCGGTGTATAGGGGTGTAAGGAAGAGGAACATAGATAAATGGGTGTGTGAAATGAGGGAGCCTAATAAGAAGACTAGGATTTGGCTAGGGACTTTTCCAACTGCCGAGATGGCAGCCCGAGCCCACGATGTTGCCGCAATGGCATTGAGGGGCCGCTACGCCTGTCTCAATTTTGCAGACTCGGCGTGGCAGCTCCCTAAACCTGCCACCACTCAAGCAAAAGATATACAAAAGGCGGCTGCACAGGCAGCCGAGGCTTTCAAGCCAAACAAAACTTTTATGACTAGAAACATTGACAAAGATGTAGCTCCCGAGGCTTTTAGACCAGACGATACTTTAATGACTAATGACATTGACACTGACACGGTTATAGTTGCTGCCACCACAGAGCAGAAGAGTATGCTTTCTAAGGAAAAAGAAGAAGAGGGGGTGATGTATGTGCCAAAAATGTTGAGGAATATGGCGCTAATGTCCCCTACACATAGCTTCGGGTATCATGAGTACGAAGATATCCATGCAGAAGAATTTCAAGATGAAGAGGAGGTATCACTATGGAATTTTTAA 711 0.4669 MFTTNNSSYSDPISSQGSHGMSLSHKEMRLAASCPKKRAGRKKFKETRHPVYRGVRKRNIDKWVCEMREPNKKTRIWLGTFPTAEMAARAHDVAAMALRGRYACLNFADSAWQLPKPATTQAKDIQKAAAQAAEAFKPNKTFMTRNIDKDVAPEAFRPDDTLMTNDIDTDTVIVAATTEQKSMLSKEKEEEGVMYVPKMLRNMALMSPTHSFGYHEYEDIHAEEFQDEEEVSLWNF* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2950 236 Pfam AP2 domain 50 100 IPR001471 GO:0003700|GO:0006355
Mal6g2950 236 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Mal6g2950 236 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700|GO:0006355
Mal6g2950 236 CDD AP2 52 110 IPR001471 GO:0003700|GO:0006355
Mal6g2950 236 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 152 236 IPR045277 GO:0003700
Mal6g2950 236 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 152 IPR045277 GO:0003700
Mal6g2950 236 SMART rav1_2 51 114 IPR001471 GO:0003700|GO:0006355
Mal6g2950 236 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 152 236 - -
Mal6g2950 236 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 1 152 - -
Mal6g2950 236 MobiDBLite consensus disorder prediction 1 22 - -
Mal6g2950 236 Gene3D AP2/ERF domain 51 109 IPR036955 GO:0003700|GO:0006355
Mal6g2950 236 SUPERFAMILY DNA-binding domain 51 110 IPR016177 GO:0003677
Mal6g2950 236 MobiDBLite consensus disorder prediction 1 28 - -
Mal6g2950 236 ProSiteProfiles AP2/ERF domain profile. 51 108 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2950 Mal-Chr6 80532405 80533115 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2950 6 236 AP2-EREBP Transcription Factor Family AT4G25470 47.863 7.38e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mal6g2950 AP2 5.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2950 - K09286 mtr:MTR_6g465850 257.299