Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2948 ATGTTTACAACTAACAACTCTTCCTATTCACACCCCTTTTCTCCAAATTCGTCTGAAAATTCATTACAGAATTCAGAAGGCTCTCAAGGGATGTCAATTTCCAACGAGGAGGTGAGGTTAGCTGCGACTACTCCGAAGAAGCGTGCAGGGAGGAAGACGTTTAAGGAGACTCGCCACCCGGTATACAGGGGTGTGAGGAAGAGGAATTTAGATAAATGGGTTTGTGAAATGAGGGAGCCTAACAAGAAGACTAAGATTTGGCTAGGCACTTTTCCAACTGCTGAGATGGCAGCCCGGGCACACGATGTTGCTGCAATGGCATTGAGGGGCCGCTACGCCTGTCTCAACTTTGCAGACTCGGCGTGGCAGCTCCCTAAACCAGCCACCACTCAAGCAAAAGATATACAAAAGGCGGCTGCACAGGCCGCTGAGGCTTTCAGACCAGACAAGACTTCGAAGAATAATGACTTTGACATGGCTATATCCGCCTCTGCCACAGAGGAGCAGAATAGTCTTTGTATGGAAGAGGAAGAAGAGGGAGTGATGAACATGCCAGAGATGTGGAGGAATATGGCGCTTATGTCACCGACACATAGCTTTGGGTATCAAGAGTATGAAGATATTCATGCTGAAGAGTTTCAAGATGAAGAGCGAGGATGGATTAAAGCAGATCTGAAGCAGAAGAAGGATGGATGTGCATATCTAAAGCAAAAAGGGGATGTGGATGGAAGAAGAAAGATCACGGGTGATGGTGGTGACAGAGGAATTAGCTAA 774 0.4703 MFTTNNSSYSHPFSPNSSENSLQNSEGSQGMSISNEEVRLAATTPKKRAGRKTFKETRHPVYRGVRKRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVAAMALRGRYACLNFADSAWQLPKPATTQAKDIQKAAAQAAEAFRPDKTSKNNDFDMAISASATEEQNSLCMEEEEEGVMNMPEMWRNMALMSPTHSFGYQEYEDIHAEEFQDEERGWIKADLKQKKDGCAYLKQKGDVDGRRKITGDGGDRGIS* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2948 257 SUPERFAMILY DNA-binding domain 61 120 IPR016177 GO:0003677
Mal6g2948 257 CDD AP2 62 120 IPR001471 GO:0003700|GO:0006355
Mal6g2948 257 MobiDBLite consensus disorder prediction 1 53 - -
Mal6g2948 257 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 218 IPR045277 GO:0003700
Mal6g2948 257 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 1 218 - -
Mal6g2948 257 SMART rav1_2 61 124 IPR001471 GO:0003700|GO:0006355
Mal6g2948 257 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Mal6g2948 257 PRINTS Ethylene responsive element binding protein signature 84 100 IPR001471 GO:0003700|GO:0006355
Mal6g2948 257 Gene3D AP2/ERF domain 61 119 IPR036955 GO:0003700|GO:0006355
Mal6g2948 257 ProSiteProfiles AP2/ERF domain profile. 61 118 IPR001471 GO:0003700|GO:0006355
Mal6g2948 257 MobiDBLite consensus disorder prediction 1 39 - -
Mal6g2948 257 Pfam AP2 domain 60 110 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2948 Mal-Chr6 80514377 80515700 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2948 11 202 AP2-EREBP Transcription Factor Family AT5G51990 50.244 3.67e-61 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal6g2948 AP2 3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2948 - K09286 mtr:MTR_6g465460 263.848