Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2947 ATGTCAGTTTCTAACAAGGAGGTGCGGTTAGCTGCGAGTACCCCGAAGAAACTTGGAGGGAGGAAGAAGTTCAAGGAAACTCGCCACCCGGTGTATAGGGGTGTGAGGAGTAGGAACTTAGATAAATGGGTGTGTGAAATCCGAAAGCCTAAAAAAAAGACCAAGATTTGGCTAGGAACTTTTCCAACAGCCGAGATGGCAGCTCGGGCCCATGATGTCGCGGCATTGGCATTGAAAGATATACAAAAGGCGGCGGCAGAAGCCGCCGAGGCTTTCAGACCAGGCAAGACTATAATGACTAAGGATATTGACAAGGTTGTAGCTTCGGCTGCCACAAATGATCCGCTTATGATTCGTATGGAAGAGGAAGATGAAGAGAAAGTGTTGAATGTTCCCGAGTCTTTGAGGAATATGGCGCTAATGTCACCTACACATAGCTTGGGGCATGAGTATGAACATATTGATTATAGAGACTTTCAAGATGTTGATGTGTCACTATGGAGTTTTTCAAATTGA 516 0.4554 MSVSNKEVRLAASTPKKLGGRKKFKETRHPVYRGVRSRNLDKWVCEIRKPKKKTKIWLGTFPTAEMAARAHDVAALALKDIQKAAAEAAEAFRPGKTIMTKDIDKVVASAATNDPLMIRMEEEDEEKVLNVPESLRNMALMSPTHSLGHEYEHIDYRDFQDVDVSLWSFSN* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2947 171 SUPERFAMILY DNA-binding domain 31 80 IPR016177 GO:0003677
Mal6g2947 171 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 79 170 - -
Mal6g2947 171 SMART rav1_2 31 95 IPR001471 GO:0003700|GO:0006355
Mal6g2947 171 MobiDBLite consensus disorder prediction 1 24 - -
Mal6g2947 171 CDD AP2 32 78 IPR001471 GO:0003700|GO:0006355
Mal6g2947 171 Pfam AP2 domain 30 78 IPR001471 GO:0003700|GO:0006355
Mal6g2947 171 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 1 79 - -
Mal6g2947 171 PIRSF PTI6 2 171 IPR017392 GO:0003700
Mal6g2947 171 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 79 170 IPR045277 GO:0003700
Mal6g2947 171 ProSiteProfiles AP2/ERF domain profile. 31 89 IPR001471 GO:0003700|GO:0006355
Mal6g2947 171 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 79 IPR045277 GO:0003700
Mal6g2947 171 Gene3D AP2/ERF domain 31 88 IPR036955 GO:0003700|GO:0006355
Mal6g2947 171 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Mal6g2947 171 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2947 Mal-Chr6 80465563 80466150 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2947 9 169 AP2-EREBP Transcription Factor Family AT5G51990 45.000 9.76e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal6g2947 AP2 5.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2947 - K09286 mtr:MTR_6g465850 241.506