Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2946 ATGTCAGTTTCTAACAAGGAGGTGCGGTTAGCTGCGAGTACCCCGAAGAAACGTGGAGGGAGGAAGAAGTTCAAGGAAACTCGCCACCCGGTGTATAGGGGTGTGAGGAGTAGGAACTTAGATAAATGGGTGTGTGAAATGAGAAAGCCTAAAAAAAAGACCAAGATTTGGCTAGGAACTTTTCCAACAGCCGAAATGGCAGCACGCCGCGACGCCTGTCTCAACTTTGCAGACTCGGCGTCGCGGCTTATCATTCCAGCAACTACCGAGACGAAAGACATACAAAAGGCGGCTGCTGAAGCTGCTGAAGCATTCAGACCAAATAAGACTTTAATGACTAAAGATATTGACAAGGTTGTAGCTTCGGCTGCCACAAAGGATCCGCTTATGTTTCGTATGGAAGAGGAAGAAGAAGAGGAAGTGTTGAACATTCCCGAGTTGTTGAGGAATATGGCGCTAATGTCACCTACACATAGCTTTGAGCATGAGCATGAACATTTCAGTGCAGATTTTGAAGATGTTGAGGTGTCACTATGGAGTTTTTCAATTTGA 552 0.4583 MSVSNKEVRLAASTPKKRGGRKKFKETRHPVYRGVRSRNLDKWVCEMRKPKKKTKIWLGTFPTAEMAARRDACLNFADSASRLIIPATTETKDIQKAAAEAAEAFRPNKTLMTKDIDKVVASAATKDPLMFRMEEEEEEEVLNIPELLRNMALMSPTHSFEHEHEHFSADFEDVEVSLWSFSI* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2946 183 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Mal6g2946 183 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Mal6g2946 183 CDD AP2 32 79 IPR001471 GO:0003700|GO:0006355
Mal6g2946 183 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 183 IPR045277 GO:0003700
Mal6g2946 183 ProSiteProfiles AP2/ERF domain profile. 31 69 IPR001471 GO:0003700|GO:0006355
Mal6g2946 183 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 1 183 - -
Mal6g2946 183 MobiDBLite consensus disorder prediction 1 27 - -
Mal6g2946 183 PIRSF PTI6 2 125 IPR017392 GO:0003700
Mal6g2946 183 PIRSF PTI6 95 178 IPR017392 GO:0003700
Mal6g2946 183 SMART rav1_2 31 83 IPR001471 GO:0003700|GO:0006355
Mal6g2946 183 Pfam AP2 domain 30 70 IPR001471 GO:0003700|GO:0006355
Mal6g2946 183 Gene3D AP2/ERF domain 31 78 IPR036955 GO:0003700|GO:0006355
Mal6g2946 183 SUPERFAMILY DNA-binding domain 31 77 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2946 Mal-Chr6 80415561 80416145 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2946 9 181 AP2-EREBP Transcription Factor Family AT4G25470 47.449 1.66e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal6g2946 AP2 5e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2946 - - mtr:MTR_6g465850 228.024