Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2944 ATGTATCCAACTAACAACAACTCTGTCTCTTCCTCTTCCTCCGACATGTCGCTTCCGAATTCAGAGGGCTCTCATTGGATGTCTGTTTGCAAAGAGGAGATGAGGTTAGCGGCAACTACTCCGAAGAAGCGTGCAGGGAGGAAGAAGTTCAAGGAGACTCGCCACCCGGTGTATAGGGGCGTGAGGAAGAGGAACTTAGATAAATGGGTTTGTGAAATGAGGGAGCCTAACAAGAAGACTAAGATTTGGCTAGGCACTTTTCCAACTGCTGAGATGGCAGCCCGGGCACACGATGTTGCTGCAATGGCATTGAGGGGCCGCTACGCTTGTCTCAACTTTGCAGACTCTGCGTGGAGGCTCCCTAAACCTGCCAGCACTCAGGCAAAAGATATACAAAAGGCGGCTACAGAGGCCGCTGAGGCTTTCAGACCAGACCAGACTTCAATGACTAATGACAATGACAATGACAATGACCGTGACCGTGACCGTGAGATGGCTGTAGTTGCCACTGCAACAACAGAGAAGCAGAGTATGAATTTTATGGAAGAGGAAGAAGAGGGAGTGATGAACATGCCAGAGATGTGGAGGAATATGGCGCTAATGTCCCCTACACATAGCTTTGAGTACCATGATCAGTATAAATATATTAATGAAGAATTTGAAGATGCAGAGGTATCACTATGGAGTTTTTAA 693 0.4747 MYPTNNNSVSSSSSDMSLPNSEGSHWMSVCKEEMRLAATTPKKRAGRKKFKETRHPVYRGVRKRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVAAMALRGRYACLNFADSAWRLPKPASTQAKDIQKAATEAAEAFRPDQTSMTNDNDNDNDRDRDREMAVVATATTEKQSMNFMEEEEEGVMNMPEMWRNMALMSPTHSFEYHDQYKYINEEFEDAEVSLWSF* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2944 230 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Mal6g2944 230 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Mal6g2944 230 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 4 230 - -
Mal6g2944 230 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Mal6g2944 230 CDD AP2 58 116 IPR001471 GO:0003700|GO:0006355
Mal6g2944 230 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Mal6g2944 230 SUPERFAMILY DNA-binding domain 57 116 IPR016177 GO:0003677
Mal6g2944 230 MobiDBLite consensus disorder prediction 139 161 - -
Mal6g2944 230 Gene3D AP2/ERF domain 57 115 IPR036955 GO:0003700|GO:0006355
Mal6g2944 230 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 4 230 IPR045277 GO:0003700
Mal6g2944 230 MobiDBLite consensus disorder prediction 1 23 - -
Mal6g2944 230 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2944 Mal-Chr6 80371976 80372668 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2944 13 230 AP2-EREBP Transcription Factor Family AT4G25470 52.273 6.00e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mal6g2944 AP2 2.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2944 - K09286 mtr:MTR_6g465990 298.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g2944 6 80371976 80372668 Mal1g1988 1 26085662 26086285 PCT