Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2943 ATGTTTCCATCAAACAGCTCTTCCTCAAAACCTTCATCTTCCTCCCACAAAATTTCACTTCCAAATTTAGATGTCTCTAATGGGATGTCAATTTTGAACGAGGAGGTGAGGTTAGCTGCCACTACCCCGAAGAAGCGTGCAGGGAGAAAGAAGTTCAAGGAGACTCGTCACCCGGTGTATAGGGGTGTGAGGAGAAGGAACTTAGATAAATGGTATTATTTTAAGATTTGGCTAGGGACTTATCCAACGGCCGAGATGGCAGCCCGAGCCCATGATGTTGCGGCGTTGGCATTAAGAGGTCGCTACGCCTGTCTGAACTTTGCAGACTCGGCCTCGCGGCTTCCTATTCCTGCAACCACCGAAACAAAAGTTATACAAAAGGCAGCTGCAGAAGCTGCGGAGGCTTTCAGATCAGACAAATCTTTAATGACTAATGACATTGACACGGATGTAGTTTCCGCAGCCACAGAGGAGCAGCTTATGTTTAATTTGGAAGAGGAAGAAGAGGAGGAAGTGTTGAACATTCCAGAGGAAGAAGATGAGGATGTGTTGAACATTCCTGAGTCGTTGAGAAATATGGCGCTAATGTCACCTACACATAGCTTGGGGCATGAGTATGAACATACTGATCATGGAGACTTTCAAGATGATGAGGTGTCACTATGGAGTTTTTCAATTTGA 681 0.4537 MFPSNSSSSKPSSSSHKISLPNLDVSNGMSILNEEVRLAATTPKKRAGRKKFKETRHPVYRGVRRRNLDKWYYFKIWLGTYPTAEMAARAHDVAALALRGRYACLNFADSASRLPIPATTETKVIQKAAAEAAEAFRSDKSLMTNDIDTDVVSAATEEQLMFNLEEEEEEEVLNIPEEEDEDVLNIPESLRNMALMSPTHSLGHEYEHTDHGDFQDDEVSLWSFSI* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2943 226 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 5 226 - -
Mal6g2943 226 SUPERFAMILY DNA-binding domain 59 110 IPR016177 GO:0003677
Mal6g2943 226 MobiDBLite consensus disorder prediction 1 21 - -
Mal6g2943 226 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 5 226 IPR045277 GO:0003700
Mal6g2943 226 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Mal6g2943 226 PRINTS Ethylene responsive element binding protein signature 90 110 IPR001471 GO:0003700|GO:0006355
Mal6g2943 226 CDD AP2 60 110 IPR001471 GO:0003700|GO:0006355
Mal6g2943 226 Gene3D AP2/ERF domain 59 109 IPR036955 GO:0003700|GO:0006355
Mal6g2943 226 SMART rav1_2 59 114 IPR001471 GO:0003700|GO:0006355
Mal6g2943 226 ProSiteProfiles AP2/ERF domain profile. 59 108 IPR001471 GO:0003700|GO:0006355
Mal6g2943 226 Pfam AP2 domain 58 100 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2943 Mal-Chr6 80313080 80317477 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2943 37 224 AP2-EREBP Transcription Factor Family AT5G51990 50.000 1.16e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal6g2943 AP2 6.1e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2943 - K09286 gmx:547622 228.409