Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2939 ATGGCGGAGGAAGAGAACAACGACATTGTCACATATATAGTGAAAATCAAAGCCACAGTCACTGTCCCAGACCCAGAAGAACCCATTCCTGACGATCAATGTTCCGTTGAAGCTGATGATGTGGTAGCCGCAGCAGCAGAAGAATCTGTTCCTGATCAAGAAAAAAAACAAGCTATGAATGTTGGCGCCAAGCTGTTGACGGACGATGAAATGGAAGCTAGGGATACTTCCTCAGTTAAAGCTGCTATGGAGATAATGAAACGCAGAAGAAAGAGTTTTGCAGAAATTCAGAAGAGGAAGATGGATGAAGAAGCGTTGTTAGGGAGCATAACAAAGGAAGAAAGAGACGTGGCAGCCGGAGGCTCTTCATCGTTTCAACCGGAGAGAAAAAGATGCGAGAGAATGAGAAAAAAACTTAATACCAAATTAAGTCCAGGAGAATCCTTAGCGTGTCATCAATGTAAAAGAAATGATAAGGGCAGGGTTATAAGATGCACAAAATGCAAACGGAGAAGATATTACATAGCCTGTTTAAAGAATCAGTATCATAAACTGAAAGAGATCGATGTTGCCGAAGCATGTCCTGTGTTCTGTAATAATTGCAATTGTAAAGCATGCTTACGATCTTTTAAACTCATTAATGAAATGAAGCACAAGGTCGAAACCAACAACGATGAGGAATTTGAGTTCTCTAAGTATATGCTGAAAGGACTTCTTCCAATTTTAAGACGGTTGGATGAAGAACAAATGATTGAGAAGGAAAGAGAAGCCAAGATACAAGGCCTCTCACTCTCAACGCTAAATATAAAACCGGCGGATATTAATCAATGTTTTATTTACTTATCTAATGCTGACTTCACACTTTTTATCCGTGGTGGGAAGCTTCTAGGTGGTCCAGATCCAATTGATCTCGAGTATATTTTCCGAGGTCAAAATAATGTATCACAGGCTGAGGATGAGTCTACGACTCGTGAGTGGTCAAGATCTGGGAGGCATGCAAACGGCGATGGTAGCATTCCCTGTCCAAAAGACGATAATGAATGTCATCATGGTTTCCTTGAACTGAGAAGGATACTTCCTCCGAATTGCATCTCCGAGTTAGTATGTAAAGCCAACGAACTTGCAGAAAGAATTAAGCTTCAAGATGTAGAGGAGACATGTGATAATAAGTGCTCTTGCTTGAAACCTGTTAGTAACGCCGATGATATACACAATAACACAAGGAAGGCAGCTTTTCATGAAGATTCAAGTGACAAATTTTTATACTGTCCTAGGGCTGTAGATCTACACCATGGAGATTTAAGACATTTTCAACGGCACTGGAGCAAAGGGGAGCCTGTAATTGTCAGCAATGTACTTGAATGTACATCTGGTTTACGCAGGGAACCACTAGTCATGTGGCATGCATTCCGTCAAAAAACCAATTCCAAATACGATGTAGTTTTGGATGTGAAGGCAATTAATTGCATAGATTGGTGTGAGAGAGATATTAATATCCACCAATTCTTCACTGGTTACACAAGGGGTTGCAAGGATTGGCTTAATTGGCCTGAGGTGTTGAAATTGAAAGATTGGCGTCCTTCTAATTTATTTCAGGAACGTTTACCTCGTCATCATGCTGAGTTCATAACTTCCTTGCCTTATAAAGAATACACAAATCCTTTTAGTGGTTCTCTCAACCTTTCTGCGAAGTTGCCGGATTATTGTGTAAAGCCTGACATGGGGCCAAGAACATATATTGCTTACGGATTTCCTCAGGATCTTGGACGCGGGGATTCAGTGACTAAGCTCCATTCTAACGTGTTTGATGCAGTAAATGTGTTGACGCATATCGCTAAAGTGGAACTGAAACCTGAGGAAATTACTGTCATTAAGAAATTGAGACATAAGCACCTTGAGCAAGATAAGAGGGAGCTACATGGTTATGGGGAGGCGGTTGATATATTTCGGGATCCCATAGAAGGTGCTCTTTGGGATATTTTTCGAAGAGAGGATGTACCCAAATTGAAGGAATATCTAAAGAAGCATTTCAAAGAGTTCAGACATGTTCATTGCTGTCCTTTAAAGCAGGTTATTGACCCCATTCTTGATCAGACCATTTATCTGACTATGGAGCATAAGATGAAACTTAAGGAGGAGTATGGAATCGAACCTTGGACTTTTATTCAGAAGCTTGGAGATGCTGTTTTCATTCCTGCTGGTTTGCCTCATCAAGTCAGAAATCTGAAGTCATGCATCAAGGTTGCACTTGATTTTGTCTCTCCTGAACATATTGGTGAGTGCTTTCGTTTGACAGAGGAATTCCGCAAGCTTCCGATAAATCACAAATCCGCCAAGGACAAGTTTGAGGCTGTTATACTACTTTTATTGATTCGATTCTGCTTTTTCTATTTATATTTAGCTTTGTTAGGTATGTATGATAATTTTAAGACAAATTCTTGTCAAGATTCATTATTATAA 2460 0.4008 MAEEENNDIVTYIVKIKATVTVPDPEEPIPDDQCSVEADDVVAAAAEESVPDQEKKQAMNVGAKLLTDDEMEARDTSSVKAAMEIMKRRRKSFAEIQKRKMDEEALLGSITKEERDVAAGGSSSFQPERKRCERMRKKLNTKLSPGESLACHQCKRNDKGRVIRCTKCKRRRYYIACLKNQYHKLKEIDVAEACPVFCNNCNCKACLRSFKLINEMKHKVETNNDEEFEFSKYMLKGLLPILRRLDEEQMIEKEREAKIQGLSLSTLNIKPADINQCFIYLSNADFTLFIRGGKLLGGPDPIDLEYIFRGQNNVSQAEDESTTREWSRSGRHANGDGSIPCPKDDNECHHGFLELRRILPPNCISELVCKANELAERIKLQDVEETCDNKCSCLKPVSNADDIHNNTRKAAFHEDSSDKFLYCPRAVDLHHGDLRHFQRHWSKGEPVIVSNVLECTSGLRREPLVMWHAFRQKTNSKYDVVLDVKAINCIDWCERDINIHQFFTGYTRGCKDWLNWPEVLKLKDWRPSNLFQERLPRHHAEFITSLPYKEYTNPFSGSLNLSAKLPDYCVKPDMGPRTYIAYGFPQDLGRGDSVTKLHSNVFDAVNVLTHIAKVELKPEEITVIKKLRHKHLEQDKRELHGYGEAVDIFRDPIEGALWDIFRREDVPKLKEYLKKHFKEFRHVHCCPLKQVIDPILDQTIYLTMEHKMKLKEEYGIEPWTFIQKLGDAVFIPAGLPHQVRNLKSCIKVALDFVSPEHIGECFRLTEEFRKLPINHKSAKDKFEAVILLLLIRFCFFYLYLALLGMYDNFKTNSCQDSLL* 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2939 819 Pfam JmjC domain, hydroxylase 657 752 IPR003347 -
Mal6g2939 819 SUPERFAMILY Clavaminate synthase-like 428 783 - -
Mal6g2939 819 SMART cupin_9 535 769 IPR003347 -
Mal6g2939 819 ProSiteProfiles JmjC domain profile. 554 769 IPR003347 -
Mal6g2939 819 Gene3D Cupin 419 778 - -
Mal6g2939 819 MobiDBLite consensus disorder prediction 315 340 - -
Mal6g2939 819 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 47 783 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2939 Mal-Chr6 79774397 79783177 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Mal6g2939 JmjC 5.7e-12 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2939 K15601 - tcc:18594898 709.909