Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2844 ATGGCTCCATCACCAGCTCCGGTGGAAAACAACGCCGTTGAGTCTACTACAACCGCTGCTACAACCACCCCCTTAGAGTCACAGAGATCTATTCCGACACCGTTTCTCACCAAAACATATAATCTCGTCGAAGATAAATCTATCGACGAGGTTATTTCTTGGAACGAAGATGGATCCACTTTCATCGTTTGGAACCCTACCGTTTTTGCTAGTAGTTTGCTTCCAAAATATTTCAAACACAATAATTTCTCCAGCTTTGTTCGTCAACTCAATACCTATGGATTTAGAAAGGTAGTACCTGACCGGTGGGAATTTTCAAACGATTGTTTCAAAAGAGGAGAGAAAAAGCTTCTATGCGAGATTCAAAGGAGGAAGATCTGTTCTCCAGCACCTTCACCGTCATCCGTTTCCACCGTTGCAACAACAGTGGAAACTACAACGGTTGCAGTTCCTTCATCGATGCCTTTGACGGTGATACCTACAACGATGCCGATGATTTCACCGTCAAACTCCGGTGAAGAACAGGTGATATCGTCCAGTTCTTCACCACCACGAGCACCGGCGGAGCTTCTCGACGAAAATGAGAGATTGAGAAAAGAGAACGTTCTGTTGAATAAAGAACTTTCTGAGATGAGATTGCTTTGTAACAATATATACACCCTCATGTCAAATTTTGCAAACAACAATAATCAAGTAGACGGTGACGCGCAAGGAAGTAGAGAATCCGGTATGACGGCGGTGAAACCGCCGCTTGATTTATTGCCGGCGGTGAAACGGAGCACCGGCGAAGAAATGAATGCGAAGCTTTTCGGTGTAGCGATTGGAACGAAACGAGTCAGAGAAAACGGTTGTGAAAATGGTGAAAGAGAAGATGATACGCTGTTGCGGCTACATCAACCGGGTTCTGCGGATGTGAAATCGGAGCCGTTGGATGAGAATGATCAAGCGCGGTGGTTGAATCAGTGTCGTAGAAAGAATCAGAGTTCGTGTAAATGA 996 0.4508 MAPSPAPVENNAVESTTTAATTTPLESQRSIPTPFLTKTYNLVEDKSIDEVISWNEDGSTFIVWNPTVFASSLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFKRGEKKLLCEIQRRKICSPAPSPSSVSTVATTVETTTVAVPSSMPLTVIPTTMPMISPSNSGEEQVISSSSSPPRAPAELLDENERLRKENVLLNKELSEMRLLCNNIYTLMSNFANNNNQVDGDAQGSRESGMTAVKPPLDLLPAVKRSTGEEMNAKLFGVAIGTKRVRENGCENGEREDDTLLRLHQPGSADVKSEPLDENDQARWLNQCRRKNQSSCK* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2844 331 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 16 317 - -
Mal6g2844 331 Coils Coil 194 214 - -
Mal6g2844 331 Pfam HSF-type DNA-binding 35 124 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mal6g2844 331 SUPERFAMILY "Winged helix" DNA-binding domain 32 124 IPR036390 -
Mal6g2844 331 MobiDBLite consensus disorder prediction 9 28 - -
Mal6g2844 331 PRINTS Heat shock factor (HSF) domain signature 86 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mal6g2844 331 PRINTS Heat shock factor (HSF) domain signature 35 58 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mal6g2844 331 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mal6g2844 331 MobiDBLite consensus disorder prediction 168 187 - -
Mal6g2844 331 MobiDBLite consensus disorder prediction 1 28 - -
Mal6g2844 331 Gene3D - 27 125 IPR036388 -
Mal6g2844 331 ProSitePatterns HSF-type DNA-binding domain signature. 74 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mal6g2844 331 MobiDBLite consensus disorder prediction 168 185 - -
Mal6g2844 331 MobiDBLite consensus disorder prediction 305 319 - -
Mal6g2844 331 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 16 317 IPR027725 -
Mal6g2844 331 MobiDBLite consensus disorder prediction 300 331 - -
Mal6g2844 331 SMART hsfneu3 31 124 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2844 Mal-Chr6 75365572 75366696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2844 19 330 HSF AT5G62020 49.398 9.87e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mal6g2844 HSF_DNA-bind 8.5e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2844 K09419 - gmx:100812267 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g2844 6 75365572 75366696 Mal1g2009 1 26451416 26452435 PCT