Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2826 ATGGGATTCCAGCTATCAGAAAAAGTACCAAAACCAAAATACAGAAAGGGATTATGGTCACCTGAAGAAGATAACAAGCTTAGTAATTATATCATTAAGCATGGTCATAGTTGCTGGAGCTCTGTCCCCATTAAGGCAGGCTTGCAAAGGAATGGAAAGAGTTGCAGACTAAGGTGGATTAACTATCTGAGACCAGGATTAAAGAGAGGTATGCTCAGCAAACATGAGGAAGATAAAATCATGACCCTTCACCACATGTTAGGCAACAAGTGGTCTCAAATTGCACAACAATTGCCAGGAAGGACCGACAATGAGATTAAAAATTATTGGCATTCATATTTGAAAAAGAAAGAAGTCAAAAGTAAGGATATTGAATCTCATAATCAAATTCAATATGCTAACTCAAGCTCAGATACAATGGACTCCTTACTCTCAACTCAAAAATATGCAATTCAAGATCCTAATTATGTGTTGTTAGAAAATATTGACAAATCAACAACTACATCATCACATTCTAATCATTCTATTTCACATAATCAAAACATTGCCAATGAAGTTTGTCAAAGAACATTACCAAGACTACTATTTGCTGAGTGGCTCTCATTGGATCAAGACAGTTTGGTGATGAGTATCATAATAGTTTAA 645 0.3535 MGFQLSEKVPKPKYRKGLWSPEEDNKLSNYIIKHGHSCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGMLSKHEEDKIMTLHHMLGNKWSQIAQQLPGRTDNEIKNYWHSYLKKKEVKSKDIESHNQIQYANSSSDTMDSLLSTQKYAIQDPNYVLLENIDKSTTTSSHSNHSISHNQNIANEVCQRTLPRLLFAEWLSLDQDSLVMSIIIV* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2826 214 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Mal6g2826 214 CDD SANT 73 114 IPR001005 -
Mal6g2826 214 PANTHER MYB DOMAIN PROTEIN 55 1 206 - -
Mal6g2826 214 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Mal6g2826 214 Pfam Myb-like DNA-binding domain 73 114 IPR001005 -
Mal6g2826 214 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Mal6g2826 214 Gene3D - 72 134 - -
Mal6g2826 214 PANTHER MYB TRANSCRIPTION FACTOR 1 206 - -
Mal6g2826 214 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Mal6g2826 214 CDD SANT 19 63 IPR001005 -
Mal6g2826 214 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Mal6g2826 214 SMART sant 68 116 IPR001005 -
Mal6g2826 214 SMART sant 15 65 IPR001005 -
Mal6g2826 214 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Mal6g2826 214 Gene3D - 16 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2826 Mal-Chr6 74320193 74331129 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2826 6 201 MYB Transcription Factor Family AT5G52260 50.481 2.33e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal6g2826 Myb_DNA-binding 3.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2826 K09422 - gmx:100803537 305.064