Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2769 ATGGATGATAATTCCTCATCAGTGCAATTGAACTGTGAAATGTCTCAAAAGAAAATTCCAATGGCTTGTGAGGCTGCAACAAAACCCAACAACAAACGGAAGAGAAAGATGGATGAAATCAAGAAAGAGGAAAATCTGAACCTGTTTGACACGATGTTCTCGAAACGCAAATTCGGACTTTTTAACAAAGTAATGGAGATATCTATTCTATGCCAAACGAAAGCTGCACTCATCGTCAAATCACCCGACAACAAGCTCTATGCATGTGGCTACCCTAACTGCGACGCAGTCGTTCAACGATTTCTGACCGGAGATATGGACTACGACGAGAAAAAGATGCAAGAAGATGATGATATTGTTGAAACCCTAAGGCTTGAATACGAAGCAATTGAAGAAAAACTTCAAGAAGAGAAGGAGAAATTGCAAGCTGTCACTGAGGAGGCTAAAAAGAGTAATTATGATTGGTGGAATCATTCTATTGATGATATGGATTTAGGATCTCTTCAACAATTTAAGACTTCTTTGGAAAATTTGAAGCTTAATTTAGTTGCAGCAACCGAAGCAAAGAAGTTTAATAAGCATCAGATTTAA 591 0.379 MDDNSSSVQLNCEMSQKKIPMACEAATKPNNKRKRKMDEIKKEENLNLFDTMFSKRKFGLFNKVMEISILCQTKAALIVKSPDNKLYACGYPNCDAVVQRFLTGDMDYDEKKMQEDDDIVETLRLEYEAIEEKLQEEKEKLQAVTEEAKKSNYDWWNHSIDDMDLGSLQQFKTSLENLKLNLVAATEAKKFNKHQI* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2769 196 Gene3D - 50 163 IPR036879 GO:0003677|GO:0046983
Mal6g2769 196 SUPERFAMILY SRF-like 34 103 IPR036879 GO:0003677|GO:0046983
Mal6g2769 196 PRINTS MADS domain signature 70 91 IPR002100 GO:0003677|GO:0046983
Mal6g2769 196 PRINTS MADS domain signature 55 70 IPR002100 GO:0003677|GO:0046983
Mal6g2769 196 PRINTS MADS domain signature 35 55 IPR002100 GO:0003677|GO:0046983
Mal6g2769 196 ProSiteProfiles MADS-box domain profile. 33 93 IPR002100 GO:0003677|GO:0046983
Mal6g2769 196 SMART madsneu2 32 92 IPR002100 GO:0003677|GO:0046983
Mal6g2769 196 Coils Coil 168 188 - -
Mal6g2769 196 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 25 192 - -
Mal6g2769 196 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 51 88 IPR002100 GO:0003677|GO:0046983
Mal6g2769 196 PANTHER MADS BOX PROTEIN 25 192 - -
Mal6g2769 196 Coils Coil 113 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2769 Mal-Chr6 71857685 71858445 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2769 32 191 Type I MADS-box Gene Family AT5G60440 33.136 6.67e-22 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal6g2769 SRF-TF 3.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2769 - - mtr:MTR_2g045020 177.948