Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2768 ATGGATGATAATTCCTCATCAGTGCAATTGAACTGTGAAATGTCTCAAAAGAAAATTCCAATGGCTTGTGAGGCTGCAACAAAACCCAACAACAAACGGAAGAGAAAGATGGATGAAATCAAGAAAGAGGAAAATCTGAACCTGTTTGACACGATGTTCTCGAAACGCAAATTCGGACTTTTTAACAAAGTAATGGAGATATCTATTCTATGCCAAACGAAAGCTGCACTCATCGTCAAATCACCCGACAACAAGCTCTATGCATGTGGCTACCCTAACTGCGACGCAGTCGTTCAACGATTTCTGACCGGAGATATGGACTACGACGAGAAAAAGATGCAAGAAGATGATGATATTGTTGAAACCCTAAGGCTTGAATACGAAGCAATTGAAGAAAAACTTCAAGAAGAGAAGGAGAAATTGCAAGCTGTCACTGAGGAGGCTAAAAAGAGTAATTATGATTGGTGGAATCATTCTATTGATGATATGGATTTAGGATCTCTTCAACAATTTAAGACTTCTTTGGAAAATTTGAAGCTTAATTTAGTTGCAGCAACCGAAGCAAAGAAGTTTAATAGTAATATTTCTGTTTAA 594 0.3754 MDDNSSSVQLNCEMSQKKIPMACEAATKPNNKRKRKMDEIKKEENLNLFDTMFSKRKFGLFNKVMEISILCQTKAALIVKSPDNKLYACGYPNCDAVVQRFLTGDMDYDEKKMQEDDDIVETLRLEYEAIEEKLQEEKEKLQAVTEEAKKSNYDWWNHSIDDMDLGSLQQFKTSLENLKLNLVAATEAKKFNSNISV* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2768 197 PRINTS MADS domain signature 70 91 IPR002100 GO:0003677|GO:0046983
Mal6g2768 197 PRINTS MADS domain signature 55 70 IPR002100 GO:0003677|GO:0046983
Mal6g2768 197 PRINTS MADS domain signature 35 55 IPR002100 GO:0003677|GO:0046983
Mal6g2768 197 PANTHER MADS BOX PROTEIN 25 194 - -
Mal6g2768 197 SUPERFAMILY SRF-like 34 103 IPR036879 GO:0003677|GO:0046983
Mal6g2768 197 ProSiteProfiles MADS-box domain profile. 33 93 IPR002100 GO:0003677|GO:0046983
Mal6g2768 197 SMART madsneu2 32 92 IPR002100 GO:0003677|GO:0046983
Mal6g2768 197 Coils Coil 168 188 - -
Mal6g2768 197 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 25 194 - -
Mal6g2768 197 Coils Coil 113 154 - -
Mal6g2768 197 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 51 88 IPR002100 GO:0003677|GO:0046983
Mal6g2768 197 Gene3D - 50 125 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2768 Mal-Chr6 71854595 71855358 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2768 32 191 Type I MADS-box Gene Family AT5G60440 33.136 7.92e-22 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal6g2768 SRF-TF 4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2768 - - cam:101507050 178.718