Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2760 ATGGATGTTCAATTGAATTGTGAAATGTCTCAAAAGAAAATTCCAAGAAAGAGAAAGATTGATGAAATCAAGAATGAGGAAAATCTGAACATGTTCGACACCATGTTCTCAAAACGCAAATTCGGACTTTTCAACAAAGTAATGGAGATATCTATTCTATGCCAAACGAAAGCTGCACTCATCGTCAAATCACCGGACAACAAGCTCTATGCATGTGGCTACCCTAACTGCGACACAGTCGTTCAACGATTTCTGACCGGAAATATTGACGACAACGAGAGAAAGAAGCAAGAAGATGATGATATTGTTGAAACCCTAAGGCTTGAATACGAAGCAATTGAAGAAAAACTTCAAGAAGAGAAGGAGAAATTGCAAGCTGTCACTGAGAAGGCTAAAAAGAGTAATTCTGATTGGTGGAATCATTCTATTGATGATATGGATTTAGGATCTCTTCAACAATTTAAGACTTCTTTGGAAAATTTGAAACTTAATTTAGTTGCAGCAACCGAAGCAAAGAAGTTTAAAATACATTCAATTTAA 540 0.3574 MDVQLNCEMSQKKIPRKRKIDEIKNEENLNMFDTMFSKRKFGLFNKVMEISILCQTKAALIVKSPDNKLYACGYPNCDTVVQRFLTGNIDDNERKKQEDDDIVETLRLEYEAIEEKLQEEKEKLQAVTEKAKKSNSDWWNHSIDDMDLGSLQQFKTSLENLKLNLVAATEAKKFKIHSI* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2760 179 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 12 174 - -
Mal6g2760 179 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Mal6g2760 179 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Mal6g2760 179 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Mal6g2760 179 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Mal6g2760 179 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 34 71 IPR002100 GO:0003677|GO:0046983
Mal6g2760 179 Coils Coil 103 137 - -
Mal6g2760 179 SMART madsneu2 15 75 IPR002100 GO:0003677|GO:0046983
Mal6g2760 179 Coils Coil 151 171 - -
Mal6g2760 179 Gene3D - 32 109 IPR036879 GO:0003677|GO:0046983
Mal6g2760 179 SUPERFAMILY SRF-like 18 87 IPR036879 GO:0003677|GO:0046983
Mal6g2760 179 PANTHER MADS BOX PROTEIN 12 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2760 Mal-Chr6 71292739 71293467 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2760 12 174 Type I MADS-box Gene Family AT5G60440 33.908 1.02e-22 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal6g2760 SRF-TF 2.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2760 - - cam:101507050 169.474