Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2756 ATGGATGTGCAATTGAACTGTGAAATGTCTCAAAAGAAAATTCCAATAGCTTGTGAGGCTGCAACAAAACCCAACAACAAACGGAAGAGAAAGATGGATGAAATCAAGAAAGAGGAAAATCTGAACCTGTTTGACACGATGTTCTCGAAACGCAAATTCGGACTTTTTAACAAAGTAATGGAGATATCTATTCTATGCCAAACGAAAGCTGCACTCATCGTCAAATCACCCGACAACAAGCTCTATGCATGTGGCTACCCTAACTGCGACGCAGTCGTTCAACGATTTCTGACCGGAGATATGGACTACGACGAGAAAAAGATGCAAGAAGATGATGATATTGTTGAAACCCTAAGGCTTGAATACGAAGCAATTGAAGAAAAACTTAAAGAAGAGAAGGAGAAATTGCAAGCTGTCACTGAGGAGGCTAAAAAGAGTAATTATGATTGGTGGAATCATTCTATTGATGATATGGATTTAGGATCTCTTCAACAATTTAAGACTTTGGAAAATTTGAAGCTTAATTTAGTTGCAGCAACCGAGGCACAGAAGTTTAATAAGCATCAAATTTAA 573 0.3787 MDVQLNCEMSQKKIPIACEAATKPNNKRKRKMDEIKKEENLNLFDTMFSKRKFGLFNKVMEISILCQTKAALIVKSPDNKLYACGYPNCDAVVQRFLTGDMDYDEKKMQEDDDIVETLRLEYEAIEEKLKEEKEKLQAVTEEAKKSNYDWWNHSIDDMDLGSLQQFKTLENLKLNLVAATEAQKFNKHQI* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2756 190 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 20 186 - -
Mal6g2756 190 Gene3D - 44 121 IPR036879 GO:0003677|GO:0046983
Mal6g2756 190 Coils Coil 108 149 - -
Mal6g2756 190 PANTHER MADS BOX PROTEIN 20 186 - -
Mal6g2756 190 SMART madsneu2 27 87 IPR002100 GO:0003677|GO:0046983
Mal6g2756 190 SUPERFAMILY SRF-like 29 98 IPR036879 GO:0003677|GO:0046983
Mal6g2756 190 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 46 83 IPR002100 GO:0003677|GO:0046983
Mal6g2756 190 PRINTS MADS domain signature 50 65 IPR002100 GO:0003677|GO:0046983
Mal6g2756 190 PRINTS MADS domain signature 65 86 IPR002100 GO:0003677|GO:0046983
Mal6g2756 190 PRINTS MADS domain signature 30 50 IPR002100 GO:0003677|GO:0046983
Mal6g2756 190 ProSiteProfiles MADS-box domain profile. 28 88 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2756 Mal-Chr6 71191971 71192728 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2756 27 185 Type I MADS-box Gene Family AT5G60440 33.136 6.39e-20 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal6g2756 SRF-TF 3.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2756 - - mtr:MTR_2g045020 172.17