Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2708 ATGGGTGTCAAGAATTTATGGGACATTCTCGAATCTTGCAAGAAAACGGTTCCTCTTCACAATCTCCAGAACAAAAGGGTGTGTGTGGATCTATCGTGTTGGATGGTTCAGCTTCAGAAAGTGAGTAAATCACATGCTTGTTTGAAAGAGAAAGTTCATCTTAGAGGACTCTTTCATCGTCTTAGAGCTCTCATTGCCCTCAATTGTACTGTTGTTTTTGTTTCAGATGGATCAATTCCTGCCATTAAGTTATCGACCTATAGGCGTCGCTTAAACAATGGAAAAGAGGTAGCACAAAACGAAGCTAACTCACAGAACGCGACATCATTACGGAGAAACCTGGGGTCTGAGTTTTCATGCATGATTAAAGATGCTAAAATCTTGGGGATGGCTCTTGGTGTCTCCTGTTTGAACGGGATTGAAGAAGCAGAAGCTCAGTGTGCTTTGTTGAACTCCGAGTCATTATGTGATGGATGTTTCAGTTCAGATTCAGATATATTTCTTTTTGGTGCAAGGACAGTGTACAGGGATATCTGCCTTGGAGACGGTGGATATGTTGTATGTTATGAGATGGCAGACATTGAAAGAAAACTTGGATTTGGACGGGAGTCATTGATTGCTCTCTCCTTGCTTCTCGGCAGTGACTATTATCCAGGAGTTCACGGTTTAGGTCCGGATTCAGCTTGTCAGATAGTCAAATCTATTGGGGACAAATTTGTTCTAAAAAAATTTGCTTCTGAAGGACTTGGATGGGTGAAAAAAATAAAAGGAGGTGAAAATAAAATAGGAAGGGATGATACCATTTTACAAGTGATTGATGCTTACTTGAAGCCAAAATGCCACTCAGCAGATTCAGATTTTCTGCTCAGGGCTCTTGCTCAGTATCCATTTCAACGTACTAAACTACATCATATATGTGCTGTATCCTTTGAATGGCCTTTTGAGAGAACAGATGGATATATCCTTCCATGTATAGCAGAAAGAGATTTACGACGATTTGCCAATTTGCGATTAACTTCATCTGAACTTGGACTGAACCTTCCATTACACGAGATCCCTGTGTCGTGTCCTGTGTTAGAAATCATTAAGATCCGAAAAGTTCAAGGGAGAGAGTGCTATGAGGTTTCTTGGAAAGACATGGATGGACTTGAAACATCAATAGTACCTGCGGATCTTATAAAAAGTGCCTGTCCCGAGAAGATTTTGGAATTTGAGGAGAAAAAAGCTTTGCGGAAGAAACCAAACGTCCAAAAAAGAAGACCGAAGAAAAAGGAAACTTCGCCTTCTCTGGCTGAGCTTGATCTAACACTGCAGAATTTGTTGTTAGATAATAATTTGGGAGACCAAACCAACCACAATGCCTCTGATTCTTCAGGAAGAATATTAGAAGAAACAACTTCTATGGCGAAAGATGATCGAAACACAGAAAACTTGATGCTGTCACATGATGACATAGAATATAATGAATGGATTCAGAATATCAGCAACATATCAAGCAATGAGGCTCTTTCTAGTAAAGATAAAAATGTGGTCATAGATCTTCTGAGTCCTTCTCCACTTAAGCCATCAAACATTTCAAAATTTCATCCATCAAGTGACAAAAATATTGAAGTGATTAATTTGAGTGATTCGGAAAATGAGGTGTCGCCGGAACATAACCAGAAAGCTAAAGAGCTTAGATTGTTCTTAGCAAGTATTAGAAACAAAATTCATTGA 1716 0.3928 MGVKNLWDILESCKKTVPLHNLQNKRVCVDLSCWMVQLQKVSKSHACLKEKVHLRGLFHRLRALIALNCTVVFVSDGSIPAIKLSTYRRRLNNGKEVAQNEANSQNATSLRRNLGSEFSCMIKDAKILGMALGVSCLNGIEEAEAQCALLNSESLCDGCFSSDSDIFLFGARTVYRDICLGDGGYVVCYEMADIERKLGFGRESLIALSLLLGSDYYPGVHGLGPDSACQIVKSIGDKFVLKKFASEGLGWVKKIKGGENKIGRDDTILQVIDAYLKPKCHSADSDFLLRALAQYPFQRTKLHHICAVSFEWPFERTDGYILPCIAERDLRRFANLRLTSSELGLNLPLHEIPVSCPVLEIIKIRKVQGRECYEVSWKDMDGLETSIVPADLIKSACPEKILEFEEKKALRKKPNVQKRRPKKKETSPSLAELDLTLQNLLLDNNLGDQTNHNASDSSGRILEETTSMAKDDRNTENLMLSHDDIEYNEWIQNISNISSNEALSSKDKNVVIDLLSPSPLKPSNISKFHPSSDKNIEVINLSDSENEVSPEHNQKAKELRLFLASIRNKIH* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2708 571 CDD H3TH_XPG-like 203 246 - -
Mal6g2708 571 ProSiteProfiles Chromo and chromo shadow domain profile. 356 416 IPR000953 -
Mal6g2708 571 Gene3D - 356 415 - -
Mal6g2708 571 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 486 IPR006084 -
Mal6g2708 571 SUPERFAMILY PIN domain-like 3 215 IPR029060 -
Mal6g2708 571 CDD PIN_GEN1 2 198 - -
Mal6g2708 571 SMART xpgn3 1 97 IPR006085 GO:0004518
Mal6g2708 571 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 129 146 IPR006084 -
Mal6g2708 571 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 205 220 IPR006084 -
Mal6g2708 571 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 150 170 IPR006084 -
Mal6g2708 571 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Mal6g2708 571 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Mal6g2708 571 Pfam XPG N-terminal domain 1 92 IPR006085 GO:0004518
Mal6g2708 571 SMART xpgineu 130 200 IPR006086 GO:0004518
Mal6g2708 571 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 200 336 IPR036279 -
Mal6g2708 571 SUPERFAMILY Chromo domain-like 358 414 IPR016197 -
Mal6g2708 571 Gene3D - 201 258 - -
Mal6g2708 571 SMART chromo_7 355 409 IPR000953 -
Mal6g2708 571 Pfam XPG I-region 133 215 IPR006086 GO:0004518
Mal6g2708 571 CDD CSD 358 408 - -
Mal6g2708 571 Gene3D - 2 199 - -
Mal6g2708 571 PANTHER FLAP ENDONUCLEASE GEN HOMOLOG 1 1 486 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2708 1 236 Core DNA Replication Machinery Family AT5G26680 25.098 1.69e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2708 K15338 - gmx:100806919 879.011