Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2624 ATGGATCCTCCAACGATCTGTGTTACTCATTCAACTGAGAGTTGTTTGACCGATGATGACATTGAAATGCCCTTCAAACAATCTCATCCAATTGCTGCTGAAATCCCTGAACCTTATCAACCTCTCAATGTATCTGATGATGATGAAGTAGAACCACGAAATGAGGGTTGGGAACTCACTGTCAGCAATGCTTTAGTACAGAGATGTAACGCACTGTATATACCAAGAAGGATTGTGGGTGAGCATAGGATGGTTTTCCAGACAAAGGTTATATTGAAGGATGAACTTGGAAATTCATACAATTGCAGGATTAAGAAGTCGAAAAGAAGAAGATATAGAGAATGGTACTTATGTGATGGTTGGTACCAATTTGCAAGACAACAAAGGTTGCAGGAAGGTGATAAGCTTCAGTTCCTGATTCATCAACAAAGTCCTCCTTATCATGTTAGGGTCAGCATTGTAAGGCGTTTAATAGATTGA 480 0.3958 MDPPTICVTHSTESCLTDDDIEMPFKQSHPIAAEIPEPYQPLNVSDDDEVEPRNEGWELTVSNALVQRCNALYIPRRIVGEHRMVFQTKVILKDELGNSYNCRIKKSKRRRYREWYLCDGWYQFARQQRLQEGDKLQFLIHQQSPPYHVRVSIVRRLID* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2624 159 SMART B3_2 57 157 IPR003340 GO:0003677
Mal6g2624 159 Pfam B3 DNA binding domain 64 145 IPR003340 GO:0003677
Mal6g2624 159 Gene3D - 43 157 IPR015300 -
Mal6g2624 159 SUPERFAMILY DNA-binding pseudobarrel domain 53 144 IPR015300 -
Mal6g2624 159 CDD B3_DNA 59 138 IPR003340 GO:0003677
Mal6g2624 159 ProSiteProfiles B3 DNA-binding domain profile. 57 155 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2624 Mal-Chr6 65983345 65984787 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal6g2624 B3 5.6e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2624 - K15213 mtr:MTR_0010s0310 48.9062