Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2611 ATGTCGAGCGGAAAGAAAAGTCAAGGTCGCCAAAAAATAGAGATGAAAAAAATGACCAAAGAGAGCAACCTGCAAGTTACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCTAGTGAGCTTTGCACACTTTGTGGTGCGTATATTGCTCTCATTGTATTCTCACCTGGTGAGAAGGTCTTTTCATTTGGACATCCAAATATTGAAACGGTCATAGATCGTTATCTCTCTGGGGTCCCAAGCCAAAACAATGGTATCACGCAGTTCATTGAGGCTCAGCGTAGCGCCAATGTGCAAAAGCTTAATGCTCTACTGACTCAGATCAACAATGCAATAGACATCGAGAAGAAACGAGGGAATGAGTTGAGCCAATTGTGCAGGAACAATGAGGCTCAACTTTGGTGGACTCGTCCCATTGATGGGATGAATATGGTCGAACTTAAACTATTCAAAAAGGCTTTGGAGGATCTTCAGAAACAAATTGCACAACATGCTGATAGAGTTGCAACTCGGTTTAATCATACCCGAATCCTTCCATTTTTTGATGGAAATGGTTCATCCTCTAACATGCCTCTCGAGCATCAGCAAAATCCTCAAGAAGATTCAATCTTTCCAGAGGAATTTGTTCAAAACCCAATGTTGAAACCTCATTTGTTTGGCTTCGATAATATGGGAGGGGAAGGTGGACATGGTCCCTACGGGTTCTTTTGA 714 0.4272 MSSGKKSQGRQKIEMKKMTKESNLQVTFSKRRSGLFKKASELCTLCGAYIALIVFSPGEKVFSFGHPNIETVIDRYLSGVPSQNNGITQFIEAQRSANVQKLNALLTQINNAIDIEKKRGNELSQLCRNNEAQLWWTRPIDGMNMVELKLFKKALEDLQKQIAQHADRVATRFNHTRILPFFDGNGSSSNMPLEHQQNPQEDSIFPEEFVQNPMLKPHLFGFDNMGGEGGHGPYGFF* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2611 237 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Mal6g2611 237 Coils Coil 148 168 - -
Mal6g2611 237 Gene3D - 91 177 - -
Mal6g2611 237 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 173 - -
Mal6g2611 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Mal6g2611 237 PANTHER MADS BOX PROTEIN 7 173 - -
Mal6g2611 237 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Mal6g2611 237 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Mal6g2611 237 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Mal6g2611 237 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Mal6g2611 237 SUPERFAMILY SRF-like 9 80 IPR036879 GO:0003677|GO:0046983
Mal6g2611 237 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Mal6g2611 237 Coils Coil 99 119 - -
Mal6g2611 237 Gene3D - 21 90 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2611 Mal-Chr6 65371912 65372625 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2611 5 189 Type I MADS-box Gene Family AT5G60440 48.936 1.82e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal6g2611 SRF-TF 8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2611 - - mtr:MTR_1g105905 273.863