Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2576 ATGAAAGCAGGGAAAGTTAACCATGAAGAAGATGAGTACGATGATGATGAGTTTAATTCTAATAAAAAACAACCCTCTTCCTCTGCCCCTAACACCAACAAAGATGGAAAAGCTACTGATAAGGCTAGTGTGATAAGATCGAAACATTCTGTAACGGAGCAGCGAAGAAGAAGCAAGATAAATGAGAGATTCCAAATATTGAGGGATCTTATACCTCAGTGTGATCAAAAGAGGGACACAGCTTCATTCTTATTAGAGGTGATTGAGTATGTTCAGTACTTACAGGAGAAGGTACAAAAATATGAAGGCTCATATCAAGGTTGGAGTCAAGAGCCGTCGAAGTTGATGCCATGGAGAAATAGCCATTGGCGTGCCCAAAATTTTGTTGGTCAACAACCTCCAATTGTAAAGAATGGTTCAGGTCCAGTATCACCATTTCCCGGAAAGTTTGACGAAAGCAGTGTTAGTATCTCTCCAACCATGCTTAGTGGCACCCATAATATGATAGATCATGATCCGAGTCGGGATATTGTCGGCAAGGCGGTGGAGAGGCAACCTGATTTAGTAAGCAAGGGAATTCCTCCACCTATGGCTATGCATGCAAACATGTCTGTTCCTGTCAGAAGTGATGGTGTACTTTCCCATCCTCTTCAGGGAACTTTTTCCGATGCACAATCAACTGAATGTCCCACAACTAGTGAACAACTGAACCAGCAGGATGAACTTACAGTTGAAGGAGGGACAATTAGCATCTCGAGTGTATACTCCCAAGGGTTGTTGAACAATCTGACTCAAGCGCTGCAGAGTGCTGGGTTAGATCTGTCAAAGGCTAACATTTCAGTTCAAATTGATCTTGGGAAGCGTGCAAACAAAGATCCAAGCGGCACAACCTCATCTCCCAAGAATCATGATAACCCTCTTTGTAGCAATCAATCATTTGCACATTTTAGAGATGGTGGCAATAGAGAAGACTCAGATCAAGCTCAAAAAAGAATGAAAATATACAAGTGA 1011 0.4204 MKAGKVNHEEDEYDDDEFNSNKKQPSSSAPNTNKDGKATDKASVIRSKHSVTEQRRRSKINERFQILRDLIPQCDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGWSQEPSKLMPWRNSHWRAQNFVGQQPPIVKNGSGPVSPFPGKFDESSVSISPTMLSGTHNMIDHDPSRDIVGKAVERQPDLVSKGIPPPMAMHANMSVPVRSDGVLSHPLQGTFSDAQSTECPTTSEQLNQQDELTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSKANISVQIDLGKRANKDPSGTTSSPKNHDNPLCSNQSFAHFRDGGNREDSDQAQKRMKIYK* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2576 336 MobiDBLite consensus disorder prediction 39 57 - -
Mal6g2576 336 MobiDBLite consensus disorder prediction 287 336 - -
Mal6g2576 336 MobiDBLite consensus disorder prediction 1 57 - -
Mal6g2576 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 94 IPR011598 GO:0046983
Mal6g2576 336 SMART finulus 50 100 IPR011598 GO:0046983
Mal6g2576 336 CDD bHLH_AtBIM_like 43 119 - -
Mal6g2576 336 PANTHER TRANSCRIPTION FACTOR BIM2 1 334 - -
Mal6g2576 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 116 IPR036638 GO:0046983
Mal6g2576 336 MobiDBLite consensus disorder prediction 22 38 - -
Mal6g2576 336 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 334 IPR044295 GO:0003700|GO:0006351|GO:0046983
Mal6g2576 336 MobiDBLite consensus disorder prediction 317 336 - -
Mal6g2576 336 MobiDBLite consensus disorder prediction 291 316 - -
Mal6g2576 336 Pfam Helix-loop-helix DNA-binding domain 46 95 IPR011598 GO:0046983
Mal6g2576 336 Gene3D - 39 115 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2576 Mal-Chr6 63781497 63787861 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2576 1 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 53.593 1.31e-115 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal6g2576 HLH 2.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2576 - - gmx:100816055 540.036