Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2546 ATGAACCATGATGAGAAAGTTACCATGGACTTGGTTCCACCATCTGATCAACACCTCTGTTACGTTCGTTGCAACTTCTGTAACACTGTTCTAGCTGTTGGCATACCATGCAAGAGGCTGCTAGACACTGTGACAGTGAAGTGTGGTCACTGCAGCAATCTCTCTTTTCTCACCACTAGACCACCAACTTCCAAAAATCAAACTGTTGATCACACCCTCAGTCTCCAGGGGATTTACAGTAGCAAAAAGGGACAACCATCATCTTCATCACCAACTGCATCAACTGAGTCATTGTCCCCTAGACCACCGCCATTTGTTGTCAAACCACCTGAGAAGAAACACCGTCTCCCTTCTGCTTACAACCGTTTCATGAAAGAGGAGATACAGCGCATCAAAGTAGCCAACCCTCAGATCCCACATCGAGAAGCTTTCAGTGCTGCTGCCAAAAATTGGGCTAGGTTCGTCCCAAATTCGCCAACCAGTTCCATTGCTGCAACTAAAAGAAACATAGAGTGA 516 0.4612 MNHDEKVTMDLVPPSDQHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLTTRPPTSKNQTVDHTLSLQGIYSSKKGQPSSSSPTASTESLSPRPPPFVVKPPEKKHRLPSAYNRFMKEEIQRIKVANPQIPHREAFSAAAKNWARFVPNSPTSSIAATKRNIE* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2546 171 PANTHER PROTEIN YABBY 6-RELATED 7 168 IPR006780 GO:0007275
Mal6g2546 171 MobiDBLite consensus disorder prediction 77 113 - -
Mal6g2546 171 MobiDBLite consensus disorder prediction 77 96 - -
Mal6g2546 171 PANTHER PROTEIN CRABS CLAW 7 168 - -
Mal6g2546 171 SUPERFAMILY HMG-box 97 153 IPR036910 -
Mal6g2546 171 Gene3D High mobility group box domain 106 157 IPR036910 -
Mal6g2546 171 Pfam YABBY protein 16 154 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2546 Mal-Chr6 62194157 62196036 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2546 1 161 C2C2-YABBY Transcription Factor Family AT1G69180 65.455 2.62e-65 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Mal6g2546 YABBY 1e-50 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2546 K25796 - gmx:100819079 283.493