Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2521 ATGTCAATGAATGAAGAAAAGGCGTCAGTGAGCCACTTCCACAGCCAAGAGAAGGAAGCACCAAAGACCCTAATGTGTAGTCTAAAGCCTTACCAAAGTCAAGCTCTGTATTGGATGACAAAAATTGAGAAGGGAGCTGATGATGAAAATGCAGAGAGAAATCTACATCCTTGCTGGTCAGCCTACAATATATGCAATGGGGAGGCAGCAAAGAAATTTCCGCAAGCAACACAGATGGCAAGAGGAGGAATCCTGCCAGATGCAATTGGACTTGGAAAGACTGTTATGACAATTGCTCTGATTCTTAGTAATCCAGACACGGCAAAGTCAGAAGACAGTGACGGAGAGAGCGAAGGAGAGAATAACATCTACCACAAGGTCCAATGGTACAGAGTGTTGCTAGACGAAGCTCATCATACAAAAGCCAATAAAAGCCAGGTTGCTCATGCTGCTATTGCTTTGTCCTCACACTGGTGCTGGTGTCTCACTGGAACACCGCTTCAGAATATCTTGGAAGATCTATTCAGTCTCTTGTCTTTCTTGCGTGTTGAACCTTGGTGCAACTCGCAATGGTGGACTAAGTTGATTCAAAAGCCATATGAGAATGGAGATCAAAGAGCCCTGAAATTGGTCAAGGGAATTTTAGGGACATTGATGTTAAGAAGAACCAAGGAAGCAAAGGATAAAGAAGGAAGGCCTATACTTGTCCTGCCGCCAACTGATATTCAATTGATTGAGTGTGAACAGTCAGAATCTGAACGGGACTTCTATGATGCTCTCTTCCTGAGAGATAAAGTCCAATTTGAGCACGGAAGTGATACTGCCAAGTATGCAGACTTGAGTAGACTTGCAAGAAAGTTCCTTGAGTCTCATACCGAATCATCTGATATGTGCTGCAAATCGGTTTTGGCTGTTTCTTTGTGCAGGTACAAGGTTAAGCTTCATGTCTCTGATGGCACTGATGATTCGGTTTTTCTTCTGTTTGATAATGAAATGAACTATCTTCTTGATAATCAGTGTTCTTTGTTGGTATCTGATACAAAGGTATATGATAGCATTGTATGA 1065 0.4235 MSMNEEKASVSHFHSQEKEAPKTLMCSLKPYQSQALYWMTKIEKGADDENAERNLHPCWSAYNICNGEAAKKFPQATQMARGGILPDAIGLGKTVMTIALILSNPDTAKSEDSDGESEGENNIYHKVQWYRVLLDEAHHTKANKSQVAHAAIALSSHWCWCLTGTPLQNILEDLFSLLSFLRVEPWCNSQWWTKLIQKPYENGDQRALKLVKGILGTLMLRRTKEAKDKEGRPILVLPPTDIQLIECEQSESERDFYDALFLRDKVQFEHGSDTAKYADLSRLARKFLESHTESSDMCCKSVLAVSLCRYKVKLHVSDGTDDSVFLLFDNEMNYLLDNQCSLLVSDTKVYDSIV* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2521 354 Gene3D - 2 115 IPR038718 -
Mal6g2521 354 Pfam SNF2-related domain 31 102 IPR000330 GO:0005524|GO:0140658
Mal6g2521 354 Pfam SNF2-related domain 123 300 IPR000330 GO:0005524|GO:0140658
Mal6g2521 354 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 14 270 - -
Mal6g2521 354 PANTHER DNA REPAIR PROTEIN RAD5B 14 270 - -
Mal6g2521 354 CDD DEXDc_SHPRH-like 28 222 - -
Mal6g2521 354 Gene3D - 116 223 IPR038718 -
Mal6g2521 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 222 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2521 Mal-Chr6 60984357 60986985 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2521 121 294 RAD5 or RAD16-like Gene Family AT5G43530 56.039 1.16e-70 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal6g2521 SNF2_N 2e-34 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2521 K15505 - gmx:100806677 258.84