Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2501 ATGGGAAGGAGTAAGGTACAGCTAAAACGGATCGAGAATAAGATCAATCGACAGGTTACTTTCTCAAAAAGGAGAACCGGTTTACTCAAGAAAGCTAAAGAAATTTCTGTTCTTTGTGATGCTGAAGTTGCTTTGATTATCTTCTCTCATAATGGAAAGCTCTTTGATTATTCAACTGATTCATGCATGGAGCAGATACTAGAACGCCATGAAAGGTATGGCTATGCAGAGAAACTACTTGTACCAAATGATACTAATACTCAGGAAAACTGGAAGATGGAATACACAAGACTCAAGGGAAAGATTGAGCTTTTGCAGAGAAACCACAGGCACTATATGGGAGAAGATTTAGCTTCAATGAGCCTGAAAGAGCTTCAATGTTTAGAGCAACAGTTAGATACTAGTCTCAAGAACATCCGTACCCGCAGAACTCAAGTCATGTATGAGGCCATTGCTGAGCTTCAGAAAAAGGAGAAAGGGATTCAAGAGCAGAATAACATGCTCTCAAAGGAGATCAAGGAGAAGGAGAAGGCTGTTGCACAGGAGACTGCTGCTCAATGGGAGCATCAAAACTATAGGGTTGATACATCTTTCTTACTACAAGACCCTCTTCTCGGGTTGAACATGGGTGGCAATTACCACGAGGGAGCACAAGAACATGGGAGGAACCGGCTTGACCTGACCCTGGAACCACTATATTACTAA 705 0.4199 MGRSKVQLKRIENKINRQVTFSKRRTGLLKKAKEISVLCDAEVALIIFSHNGKLFDYSTDSCMEQILERHERYGYAEKLLVPNDTNTQENWKMEYTRLKGKIELLQRNHRHYMGEDLASMSLKELQCLEQQLDTSLKNIRTRRTQVMYEAIAELQKKEKGIQEQNNMLSKEIKEKEKAVAQETAAQWEHQNYRVDTSFLLQDPLLGLNMGGNYHEGAQEHGRNRLDLTLEPLYY* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2501 234 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mal6g2501 234 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mal6g2501 234 Coils Coil 88 108 - -
Mal6g2501 234 Gene3D - 13 77 IPR036879 GO:0003677|GO:0046983
Mal6g2501 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mal6g2501 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal6g2501 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal6g2501 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal6g2501 234 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677|GO:0046983
Mal6g2501 234 Coils Coil 151 190 - -
Mal6g2501 234 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Mal6g2501 234 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 218 - -
Mal6g2501 234 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal6g2501 234 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal6g2501 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal6g2501 234 PANTHER MADS BOX PROTEIN 1 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2501 Mal-Chr6 60251361 60258000 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2501 1 233 MADS-box Gene Family AT1G26310 60.484 9.71e-96 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mal6g2501 K-box 6.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2501 K09264 - gmx:100810129 355.525