Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2500 ATGGGTAGGGGAAAGGTAGAGTTGAAGAGGATTGAGAACAAAATAAATCGTCAAGTAACATTTGCAAAGAGAAGAAATGGGTTACTCAAGAAGGCTTATGAACTCTCTGTCCTTTGTGATGCTGAGGTTGCTCTCATTATTTTCTCTAACCGTGGAAAGCTCTATGAGTTCTGCAGTGGCACTAGCATGGCCAAGACAGTTGAACGGTATCAAAGATGCAGTTATGGAGCCTTGGAAATACACCACCAACCTGAGATTGAGACACAGATGCGCTATCAAGAGTATCTCAAGCTAAAATCAAAAGTTGAGGCACTACAGCAAACACAGAGAAACATTCTTGGAGAAGAATTGGAGCACTTGGATATCAATGAGCTTGAGCAGATAGAACGTCAGTTAGACTCTTCCTTAAAGACAATCAGGTCAAACAAGACACAACATATGCTTGATCAACTTACGGATTTGAAAAGAAAGGAAGAAATGCTACTGGAGACTAATAATATCCTGAGGAGTAAGGTATATAAAACAAATCTATAA 534 0.3951 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGTSMAKTVERYQRCSYGALEIHHQPEIETQMRYQEYLKLKSKVEALQQTQRNILGEELEHLDINELEQIERQLDSSLKTIRSNKTQHMLDQLTDLKRKEEMLLETNNILRSKVYKTNL* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2500 177 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal6g2500 177 ProSiteProfiles K-box domain profile. 88 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal6g2500 177 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mal6g2500 177 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mal6g2500 177 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Mal6g2500 177 PANTHER MADS BOX PROTEIN 1 174 - -
Mal6g2500 177 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal6g2500 177 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Mal6g2500 177 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Mal6g2500 177 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mal6g2500 177 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 174 - -
Mal6g2500 177 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal6g2500 177 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal6g2500 177 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2500 Mal-Chr6 60216386 60226974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2500 1 172 MADS-box Gene Family AT5G15800 71.512 2.07e-85 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mal6g2500 K-box 1e-25 No_clan