Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2496 ATGGAATCTTGGAGTTACATCCCTGAAGAGAGAAGCTATTTGTTTTCTGATGAAATGGACTTTTCACTCGACACATTTATGAGAAGTAGAAAACCATTGGTTGAATGGGAGAACAAATCTTCATGTAACTTTGAGAGAGATGGATTTAATTCAGAAAGAGAGGTAGTTAAAAGTATGGAGTTTGTGGACTTGGGATTTCCTATGGAGATATCTAGGACTGTTCGTGGTTCGGTTCAGACATCTAGTTGTGAGCTGGATAGTAATAATTCTAGTAAAAGAGAGAATTCATCAATCCATGTTATTGCTTTTGATTCATCTTTTGGTGAAGAAGATTCTGAGTCAAAACATTTAAGTTCTCGAGTTGAATCAAAAACTCATGATTCTTCATTGATTGATCTGAAGCTAGGGAGATTAGTAAGTTTTCAAGATGCAAGTAGTGATATTGATGCAAAAACATTCACTTATGAATCAATGCCGATGCATCAAACCGCACTAGCAAAGAGAGCTCGGACTTCTAGCTTACCTTCTCAGGCTCCTGTATGCCAAGTTTATGGTTGTAACATGGATCTTAGCTCCTCGAAAGATTATCACAAACGGCATAAAGTTTGTGATGTTCACTCCAAGACTGCTAAAGTTATTGTCAATGGTGTTGAACAGAGGTTTTGTCAGCAGTGTAGCAGGTTCCATTTGGTAGCTGAGTTTGACGATGGTAAGCGCAGTTGTCGCAGGCGTCTAGCTGGACACAATGAACGCCGAAGGAAACCTCAGTTTGATTACATGACTAGTAAACAACACAAGATTCTTCAGTCATATCAAGGTACTAAGTATCTAGGGTCTTCATTACAAAACATATCCCACTTTTCATTTCAAGACATATTTCAAAGTGGAATCCTTTTCTCAGAAAAGCATGATCAAATCTCTCAAAGTGGACATATTAAACTTGAAGAGGAGCCGATTTGCAGTCCTCAACTTGAAGCACCCGCCGCACTTGGTCACGAGTTATCTAGCCGTGCTCTCTCTCTTCTGTCAGCCCAGTCACAGAATCCGTCGTGCTACACAGCAGGAAATTCATTAGCTACTTCACTTGTTTTTCACGGCATCCGCACACAAGATAAAGATGACCAAGTTTCTGAAACGCCTTTGAGGATAAGCTCCGTCGACAAACATAAAGAAAGTGAGTCTTTTTCATGTGGGGTAAACTCTAAGGAAACTCTCAAATCTGAACATGGTGACACTGTTGATCTGTTTCAGTTGTCTTCTAATCTTCAAAGGGTGGAGAAGCAAAGAAATTCTGTTTTGGTTAAGTGGGAAAATGAGGATTGCTGTTTCTCAAACGTGTGA 1341 0.3967 MESWSYIPEERSYLFSDEMDFSLDTFMRSRKPLVEWENKSSCNFERDGFNSEREVVKSMEFVDLGFPMEISRTVRGSVQTSSCELDSNNSSKRENSSIHVIAFDSSFGEEDSESKHLSSRVESKTHDSSLIDLKLGRLVSFQDASSDIDAKTFTYESMPMHQTALAKRARTSSLPSQAPVCQVYGCNMDLSSSKDYHKRHKVCDVHSKTAKVIVNGVEQRFCQQCSRFHLVAEFDDGKRSCRRRLAGHNERRRKPQFDYMTSKQHKILQSYQGTKYLGSSLQNISHFSFQDIFQSGILFSEKHDQISQSGHIKLEEEPICSPQLEAPAALGHELSSRALSLLSAQSQNPSCYTAGNSLATSLVFHGIRTQDKDDQVSETPLRISSVDKHKESESFSCGVNSKETLKSEHGDTVDLFQLSSNLQRVEKQRNSVLVKWENEDCCFSNV* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2496 446 Gene3D - 172 242 IPR036893 GO:0003677|GO:0005634
Mal6g2496 446 ProSiteProfiles Zinc finger SBP-type profile. 178 255 IPR004333 GO:0003677
Mal6g2496 446 SUPERFAMILY SBT domain 179 260 IPR036893 GO:0003677|GO:0005634
Mal6g2496 446 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 44 443 IPR044817 GO:0003677
Mal6g2496 446 Pfam SBP domain 181 254 IPR004333 GO:0003677
Mal6g2496 446 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 44 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2496 Mal-Chr6 59808389 59813047 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2496 1 430 SBP-box Gene Family AT1G69170 35.230 2.10e-65 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mal6g2496 SBP 2.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2496 - - mtr:MTR_5g046670 751.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g2496 6 59808389 59813047 Mal6g2496 6 59808389 59813047 ECH
Mal6g2496 6 59808389 59813047 Mal5g2615 5 76535759 76537784 PCT