Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2486 ATGAGCGATCACTTGGTAGTCATCGTTGACCAACTCGACCACCCAGTTGTTCCTGTTGACCAGCCTGCTCAGCTTTCTTCCGAATCATCGCCATCTCCGGTGACCACCGATGCCGGATCATCTGGATCTGGCTCGGCGGTGGATCGGGATGGCGATGATTGTGATGAGGAGGAACCGCTGATCCAGATGGTTGAGTGCCGTATCTGTCAGGAGGAGGATAGCGTTTCCAATTTGGAGACTCCCTGTGCCTGTAGCGGTAGTCTCAAGTATGCTCACAGAAAGTGTGTCCAGCATTGGTGTAATGAGAAAGGAGACATAACTTGTGAGATATGTCATCAGCCTTATCAATCTGGGTATACTGCCCCACCACCTCGTCCTATTCCTGAAGAAACCACTATTGAAATAGGAGGAGGCTGGACATTATCTGGCTCACCCTTGGACTTGCGTGATCCTCGACTATTGGCAATTGCAGAGGCAGAGCGTCAGTTCCTGGATGCCGAATATGATGAGTATGCTGCTTCTAATGCTAGTGGAGCTGCATTTTGCCGCTCAGCTGCTCTAATTTTGATGGCCCTTTTACTTCTGCGGCATGCACTCGCCGTAACAGATGGTGATTCTTCTGATGATGATCCATCCAATTTTTTCTCACTTTTCTTGCTTCGAGCTGCTGGGTTTCTTTTACCTTGCTATATTATGGCTTGGGCAATCAGTATTCTGCAACGCCGGCGTCAAAGACAAGAGGCTGCCGAACTAGCAGCAACCCAAGTTGCTTTTGTTCTAAATTCTGGGCAGCGTAGAGGTCTACACTTTGCGATAGCACCAGGACCTACAGTACAGCAGGAACAAGTGTAG 852 0.493 MSDHLVVIVDQLDHPVVPVDQPAQLSSESSPSPVTTDAGSSGSGSAVDRDGDDCDEEEPLIQMVECRICQEEDSVSNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQPYQSGYTAPPPRPIPEETTIEIGGGWTLSGSPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALAVTDGDSSDDDPSNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAELAATQVAFVLNSGQRRGLHFAIAPGPTVQQEQV* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2486 283 CDD RING_CH-C4HC3_MARCH 66 112 - -
Mal6g2486 283 Pfam Protein of unknown function (DUF3675) 118 236 IPR022143 -
Mal6g2486 283 MobiDBLite consensus disorder prediction 22 43 - -
Mal6g2486 283 Coils Coil 154 174 - -
Mal6g2486 283 SUPERFAMILY RING/U-box 64 116 - -
Mal6g2486 283 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 275 - -
Mal6g2486 283 Pfam RING-variant domain 66 111 IPR011016 GO:0008270
Mal6g2486 283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 122 IPR013083 -
Mal6g2486 283 SMART ringv_2 65 112 IPR011016 GO:0008270
Mal6g2486 283 MobiDBLite consensus disorder prediction 11 54 - -
Mal6g2486 283 ProSiteProfiles Zinc finger RING-CH-type profile. 58 118 IPR011016 GO:0008270
Mal6g2486 283 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 275 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2486 Mal-Chr6 59367764 59371067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2486 65 152 C3H Transcription Factor Family AT2G37950 30.769 5.01e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2486 - - gmx:100779674 416.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g2486 6 59367764 59371067 Mal6g2486 6 59367764 59371067 ECH