Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2399 ATGGCGATGATTCAAGGAGTGCAAAAGAACACTCTCTACGTGGGAGGTTTAGCGGAAGAGGTGAACGAATCAATCCTTCACGCGGCGTTTATACCCTTCGGAGACATCAAGGACGTGAAGACTCCTCTTGACCAAGCTACGCAGAAGCATCGTTCCTTCGGGTTCGTCACTTTTCTTGAAAGGGAAGATGCTTCTGCTGCTATGGATAATATGGATGGTGCTGAACTCTATGGTCGTGTTCTTACTGTTAATTATGCTCTTCCGGAGAAGATTAAGGGTGGTGAACAGGGATGGGCTGCTCAACCAATTTGGGCGGATGCGGATACTTGGTTTGAGCGGCAGCAACAAGAGGAGGACATGCGTCGCCTCGAAGCAGAAAATAAAGCTGCAATGCTGGCTGCTGAAGAACTGCACAGGAAGCAAGTAGCCGAAGAGCGAGAAGGAGAGAAAGAGGAAATTGAGATCAAGGATGATCCTATGGCGAGGGCTGAAGCAGAGGCTGTTGGAAATTGA 513 0.4893 MAMIQGVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMDNMDGAELYGRVLTVNYALPEKIKGGEQGWAAQPIWADADTWFERQQQEEDMRRLEAENKAAMLAAEELHRKQVAEEREGEKEEIEIKDDPMARAEAEAVGN* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2399 170 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 88 IPR000504 GO:0003723
Mal6g2399 170 SMART rrm1_1 11 84 IPR000504 GO:0003723
Mal6g2399 170 Coils Coil 113 140 - -
Mal6g2399 170 Gene3D - 4 151 IPR012677 -
Mal6g2399 170 PANTHER TRANSFORMER-2-RELATED 5 168 - -
Mal6g2399 170 SUPERFAMILY RNA-binding domain, RBD 8 97 IPR035979 GO:0003676
Mal6g2399 170 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Mal6g2399 170 CDD RRM_PPIE 12 84 IPR034168 GO:0003723
Mal6g2399 170 MobiDBLite consensus disorder prediction 140 170 - -
Mal6g2399 170 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E 5 168 - -
Mal6g2399 170 MobiDBLite consensus disorder prediction 140 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2399 Mal-Chr6 56140937 56142886 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2399 10 88 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 2.52e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2399 - - gmx:100809447 304.293