Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2354 ATGGAAGTTGGTGATGTGAATGGAGACCATGTTGCTGATGGGAATGAAGGGCAAGCTTTCAATGATATTGCTGACAATGATTCATGTACCGATGATTTAAAGGTTAATGGTAAAGAACCATACATAGGAATGCAATTCGACTCACAGGAAAATGCTTATTCCTTTTACAATAATTATGCTAAATGTGTCGGATTCGGAATATCAACTAAAAATAGTCGTTCTTCAAAAGTTTCTAGACAGTTTATTCATGTAACTTATGCTTGCACAAGATATGGGAAGAAGCGGGAATCCACCTTACGTATGAAAAGAAGTTCTGATGGAAATTGGATTGTTCATAACTTCATTAAAGACCACAATCATGAACTTTTTCCATCATATGCACATTATTTTCCTTGCCATAGAGGAATCAATAAAGCTCAAGCATTAACAAGCAAAATTTATGCTACATTGGCCAAACAACATGGAGGATATGAAAACATTGGTTGCTTGGAGAAAGATATCCGAAATCATTTAGATAAAGGTCGGCGATTGGATTTAGAATCAGGAGACGCAAATGCAATGTTGGAGTGTTTTATGCTAATGCAAGAGGAAAATCGAAGATTCTTTTATGCAATTGATTTGGATGATGAAAATCGTGTAAAAAATGTATTTTGGATGGATGCAAAAGGTAGAGATGACTATCAAGAGTTCGGAGATGTGGTTTCATTTGATACTACATATATTACTAATAAGTTACTTGGTTGTGCGTTACTCTCAGATGAGTCCACACATACTTTCACATGGTTGATGAAAACATGGCTTAGATCAATGGGTGGAAAATCTCCAAATGCAATAAAAACCGATCAAGATAGAGCAATGAAAGCGGCTATCAAAGAGGTATTACCAAGCAGTGCTCGACATCGCTTTTGTCTTTGGCATATACTTCGAAAGGTGCCCGAGAAGCTTAGTCATGTACTATCAAAACATGAAAACTTCATGATATATCTCAACATGTGCATTTATAAGTCTTGGTCAAAACTGGAATTTGAAGATAAATGGCATGAAATGGTAGAAAAATTTCAACTATTGGGAGATGAGTGTATTCACTCTTTATATGAAGAATGTGAACATTGGGTTCCTAGCATTAAGTCTTTTTTTGACAAAAATGTATGTAAGAAAACTACATTAAAGGAATTTGTTGAAAAATATAAAGTTGCTTTACAAGATAGAGAAGAAGCGGAAATGCAACCATATTTTAATACATGGCACAAGCAACTCCAAATGTCAATGATTTATACACATGAAGTCTTCAAGAAATTTCAAGTTGAAGTTTTGGGATTGTCTGGATGTCGTATTGTGAAAGAGCATAACGATAGTCTAACTACAACTTTTACAATCTTCGACTTTCAGCAAAATGAAGAGTTTGTTGTAGAGTGTGATGTATTGAAAGAAGAAATATCATGCATATGTCACTTGTTTGAGTATAGTGGGTATCTTTGCAAACATTCATTAATGGCACTCCAAGTTGTTGGTGTATTTGATGTCCCATCACGTTATATATTGAGAAGATGGACCAAAGATATTAGAAGCAAGCATCTCAAAAGGAAAATGAGAGAAGATGAAGGATCGTTAAGTTTTGAGAGCTACAATTTTGCATGTCATGCACTTGAAGAGACCTTGAAACAATGTGCATCTATCAATCAATCTTTGAAAATAAACAAGGAACGTGTTGGTCAAAACACTTTACATGATAATGAAGGTGAGAAAAATACAAGAAGGGGGGTTGAATTAGAGACACAAGCAATTTTTCCTGGTTCCTTCCTCTGTCAAAATTGTGAACTTGCTGTTTTTGACATGGCACGTCAGAGATCCAACATGCCACGTTGGGGATCTGTTGTTTTTAACGTTGCACGTTGGGATTTCAACGTAACACGTTGGAGTGCTGAAACGGTCAAAAATTGCTGTTTTCAAGGTGAACGTGGCACGTCCAGGGGCTGGCGTGGCACGTTGGTTCGCAGATTTGAAATGTTTTAA 2013 0.3607 MEVGDVNGDHVADGNEGQAFNDIADNDSCTDDLKVNGKEPYIGMQFDSQENAYSFYNNYAKCVGFGISTKNSRSSKVSRQFIHVTYACTRYGKKRESTLRMKRSSDGNWIVHNFIKDHNHELFPSYAHYFPCHRGINKAQALTSKIYATLAKQHGGYENIGCLEKDIRNHLDKGRRLDLESGDANAMLECFMLMQEENRRFFYAIDLDDENRVKNVFWMDAKGRDDYQEFGDVVSFDTTYITNKLLGCALLSDESTHTFTWLMKTWLRSMGGKSPNAIKTDQDRAMKAAIKEVLPSSARHRFCLWHILRKVPEKLSHVLSKHENFMIYLNMCIYKSWSKLEFEDKWHEMVEKFQLLGDECIHSLYEECEHWVPSIKSFFDKNVCKKTTLKEFVEKYKVALQDREEAEMQPYFNTWHKQLQMSMIYTHEVFKKFQVEVLGLSGCRIVKEHNDSLTTTFTIFDFQQNEEFVVECDVLKEEISCICHLFEYSGYLCKHSLMALQVVGVFDVPSRYILRRWTKDIRSKHLKRKMREDEGSLSFESYNFACHALEETLKQCASINQSLKINKERVGQNTLHDNEGEKNTRRGVELETQAIFPGSFLCQNCELAVFDMARQRSNMPRWGSVVFNVARWDFNVTRWSAETVKNCCFQGERGTSRGWRGTLVRRFEMF* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2354 670 Pfam MULE transposase domain 246 309 IPR018289 -
Mal6g2354 670 Pfam SWIM zinc finger 472 502 IPR007527 GO:0008270
Mal6g2354 670 Coils Coil 389 409 - -
Mal6g2354 670 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 16 614 - -
Mal6g2354 670 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 16 614 IPR031052 GO:0006355
Mal6g2354 670 SMART 26again6 479 506 IPR006564 GO:0008270
Mal6g2354 670 Pfam FAR1 DNA-binding domain 54 97 IPR004330 -
Mal6g2354 670 ProSiteProfiles Zinc finger SWIM-type profile. 468 504 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2354 Mal-Chr6 54848867 54851870 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mal6g2354 MULE 1.1e-14 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2354 - - dzi:111309578 684.485