Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2322 ATGTCTTCTCAGAGTCGTGCTCATTTGTTCCATAAGTCACAATGTTTTTTCAAAGTCATTGTCGAGGAAACCCTTAGAACGAAAGAGCTTATGATTCCTAGGAGTTTTGTGAAGAAATATGGCAAAGAATTACCAAACCCAGTAACCCTCATTCTACCAAATGGTGATAAATGGAAAGTAAATTGGATAAAACGTGACGATGATGTGTGGTTTCAAAATGGTTGGGAAATTTTTGCACAACACTATTCTATGAGTTTTGGACATTTTTTAGTTTTTAGATTTGAAAGGTCTCAATTTCAAGTAATGATATTTGACAAAAGCGCTTTGGAAATTGACTATTGGAGTATAACAAGCTCTAGAGATGATGTTGGAAGAAATATTCAAGATCATGAAGATGCTCAAAAGAGTAGTGATGAAGATAATTCTATTGAGATTTTGGATGAGAGTGAAATACAAAGATCTTCATCACCTGAACCTCACAAAAGAATGAAAACCAATGATGGAGATAATAGCCATAGGGAAGGTTTCTTCAAAGCAAAGCATCGTTCATCAAATCAAGCTAAAAAAAGGAAATATATGAATTTTCATTTTGATAATCCCTTTTTCATTCGTCCGTTGCTTCCATCCTACCTTGAACATTTGGTTATACCAACACGGTTTTCCAAAGAATATTTGAATGGCAAGAATGGGATTGCAACCATAGTGTTTGGTGATGAGGATAGGACTTGGCACTTGAAGTTCAAGTTCGATGATACCTCTAATAGAATAGTCATGAGTTCCGGTTGGGTGCAGATTGTGGAGGAATATAATTTAAAAGTGGGTGACATTTGTGTATTTGAGATGATTGATTGCACAAATATTTCATTTAAAGTTCATATAGTCCGAGCTGAAGATCAATATAGCTCCAAACACTTTCAAGATTCTGAAAATCCTACAATGAAGAGGAGATTAAATTCAAGACAAAATTGA 969 0.3457 MSSQSRAHLFHKSQCFFKVIVEETLRTKELMIPRSFVKKYGKELPNPVTLILPNGDKWKVNWIKRDDDVWFQNGWEIFAQHYSMSFGHFLVFRFERSQFQVMIFDKSALEIDYWSITSSRDDVGRNIQDHEDAQKSSDEDNSIEILDESEIQRSSSPEPHKRMKTNDGDNSHREGFFKAKHRSSNQAKKRKYMNFHFDNPFFIRPLLPSYLEHLVIPTRFSKEYLNGKNGIATIVFGDEDRTWHLKFKFDDTSNRIVMSSGWVQIVEEYNLKVGDICVFEMIDCTNISFKVHIVRAEDQYSSKHFQDSENPTMKRRLNSRQN* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2322 322 ProSiteProfiles B3 DNA-binding domain profile. 199 297 IPR003340 GO:0003677
Mal6g2322 322 PANTHER B3 DOMAIN-CONTAINING 12 296 - -
Mal6g2322 322 Gene3D - 179 300 IPR015300 -
Mal6g2322 322 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 12 296 - -
Mal6g2322 322 Gene3D - 9 108 IPR015300 -
Mal6g2322 322 SUPERFAMILY DNA-binding pseudobarrel domain 198 297 IPR015300 -
Mal6g2322 322 MobiDBLite consensus disorder prediction 130 175 - -
Mal6g2322 322 CDD B3_DNA 15 105 IPR003340 GO:0003677
Mal6g2322 322 ProSiteProfiles B3 DNA-binding domain profile. 15 107 IPR003340 GO:0003677
Mal6g2322 322 MobiDBLite consensus disorder prediction 151 175 - -
Mal6g2322 322 SUPERFAMILY DNA-binding pseudobarrel domain 12 107 IPR015300 -
Mal6g2322 322 SMART B3_2 16 107 IPR003340 GO:0003677
Mal6g2322 322 SMART B3_2 202 297 IPR003340 GO:0003677
Mal6g2322 322 CDD B3_DNA 200 295 IPR003340 GO:0003677
Mal6g2322 322 Pfam B3 DNA binding domain 212 296 IPR003340 GO:0003677
Mal6g2322 322 Pfam B3 DNA binding domain 16 106 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2322 Mal-Chr6 54045639 54049212 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2322 16 298 B3 DNA Binding Superfamily AT3G18990 28.446 3.39e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal6g2322 B3 7.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2322 - - mtr:MTR_5g044670 481.87