Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2301 ATGAGTATTGATAAACTTTTTCAATGGATTCATGGCTACAATACAATCCCAAAGATAAACAACCATTCATTAACTATTTCTGATTCATCATCATCAGTTGCTATCAATAATTTTGGTAGTCATGCTCCTGGAATCAAGAAAGCGATGCAAATTCTTGAAACTCAGTTTGGGAATCAACATGCATCAACATCGTCTTCGTCATCGTCACTATCAACTATTAATATTAATGATGTCATCATAAAAAACAACAACATGATGACATCGATGAATGCTTCTGCTGCTTCTTATCATCCTGTTCTCCCTGCAGGCACATCATCACAATCTCAAGAACTCCCTTCTCAAACGATCAATATTGTTGTTGTTGTTGGTGATGATGTTGGGGATGGTGAAAAGAACAATAGGAGGAAGAAGAGAAATGAAAATATTGATGATGGTAGAATCCATAGCCTATCATACAAGAAATATGGACCTTACACGTGTCCAAAGTGCGACAAAGTCTTTGAAACATCACAAAAATTTGCTAATCATGTTTCATCAATTCACTACAAGTTCGAAAGTGAAGAAGAGAGAAATAAGAGATACATGTCTAGAATCCGAAAGAGACCAGGTCTGCGGATTCAAAAGGTAAATGATGGAACAACTACTTTTGTTCCTGTTACTGCTTCTGCTGATAAGACACATGCTTCAATTAATAATGATTATTAA 705 0.3546 MSIDKLFQWIHGYNTIPKINNHSLTISDSSSSVAINNFGSHAPGIKKAMQILETQFGNQHASTSSSSSSLSTININDVIIKNNNMMTSMNASAASYHPVLPAGTSSQSQELPSQTINIVVVVGDDVGDGEKNNRRKKRNENIDDGRIHSLSYKKYGPYTCPKCDKVFETSQKFANHVSSIHYKFESEEERNKRYMSRIRKRPGLRIQKVNDGTTTFVPVTASADKTHASINNDY* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2301 234 ProSiteProfiles Zinc finger C2H2 type domain profile. 158 186 IPR013087 -
Mal6g2301 234 SUPERFAMILY beta-beta-alpha zinc fingers 152 185 IPR036236 -
Mal6g2301 234 ProSitePatterns Zinc finger C2H2 type domain signature. 160 181 IPR013087 -
Mal6g2301 234 SMART c2h2final6 158 181 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2301 Mal-Chr6 53230805 53231509 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2301 144 226 C2H2 Transcription Factor Family AT5G22990 54.217 5.94e-24 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal6g2301 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2301 - - mtr:MTR_3g084720 244.588