Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2283 ATGGATGGAAGAACATCAATGGTATTCACTCAGGCTTGTGGTGTAATGCTTCGTCTGGCTTTGACTCTTAAGAATCTTGGTTTCAAAGCCTTCCCAATTAATGGTCTTATGAGTCAGGCAAAGAAACTTGAAGCATTGAATGTGTTCACGTCTGGGGAGTGCAATATTCTCCTTTGTAATGAGGTAGCTAGTAGGGGACTAGATATTCCAGCGGTAGATGTGGTGATTAACTACGACATTCCCGGAGACCCCAAAGATTATATGCATCGTATGGGATGGACTGCTCGTACTGGAGTTGCCATTTCCTTTGTGGACCCATCTGAAGTGGCATGGTTAAAAATAATAGGGAGACATATAGACAAGAAGATGCCATTGAATCCGACAGATGATGAGGAAGATTTTCTTTTGAAAAGCCGTGTTAGTGAGGCCAAAAGATTAGCAGACAAGGTCCAGAAGATCCAAAGTGTGTATTTAAGGAATCATATCAAGATTGATGTATCTTCCGAATATTTGGACACTCTGAAGCAGCAGCATTGCTCCATGCCAGCAGAACATAAGGGAATTGCGACCGAAAACTCTGAAAATTCAGCTGATGGAGATATTGTTGTTATCAAAACAAATGATGGAGTTGCTCACAATGTTGAACGAGTCTTCGTGGCGCAGATCCAGAGAAAGTGTGGCCTTGCAGCATCTGGAACTGAATTTGAACTTTCCAATGTGGGAAGCGAAGACCTAAAGACTGTCATTAGGCTTTTCAAACAACTCCAAGCCAATAAGAAGATTGATGTGGTAGAGTTTACAAATGAACAACTCAGAGAACTTGTCTTAGTGGTTTATCAACTCGGCTTCAGTGAGCTGCAAACTTCCGTATGTCAGGTCATTGCTGATAGATTACGAAATCAGAGTACGGATTATATGCGAACATTTTTTGGATTTCAAAATGAATGCACTGAAGAGGGAGTGAGTTAA 969 0.4138 MDGRTSMVFTQACGVMLRLALTLKNLGFKAFPINGLMSQAKKLEALNVFTSGECNILLCNEVASRGLDIPAVDVVINYDIPGDPKDYMHRMGWTARTGVAISFVDPSEVAWLKIIGRHIDKKMPLNPTDDEEDFLLKSRVSEAKRLADKVQKIQSVYLRNHIKIDVSSEYLDTLKQQHCSMPAEHKGIATENSENSADGDIVVIKTNDGVAHNVERVFVAQIQRKCGLAASGTEFELSNVGSEDLKTVIRLFKQLQANKKIDVVEFTNEQLRELVLVVYQLGFSELQTSVCQVIADRLRNQSTDYMRTFFGFQNECTEEGVS* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2283 322 Pfam Helicase conserved C-terminal domain 3 98 IPR001650 -
Mal6g2283 322 SMART helicmild6 17 98 IPR001650 -
Mal6g2283 322 CDD SF2_C_DEAD 6 104 - -
Mal6g2283 322 Gene3D - 1 198 IPR027417 -
Mal6g2283 322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 138 IPR027417 -
Mal6g2283 322 Gene3D Potassium Channel Kv1.1; Chain A 200 321 IPR011333 -
Mal6g2283 322 PANTHER RNA HELICASE 1 147 - -
Mal6g2283 322 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 136 IPR001650 -
Mal6g2283 322 SUPERFAMILY Skp1 dimerisation domain-like 263 319 IPR036296 GO:0006511
Mal6g2283 322 Pfam Skp1 family, dimerisation domain 289 319 IPR016072 GO:0006511
Mal6g2283 322 PANTHER BNAC02G41920D PROTEIN 1 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2283 Mal-Chr6 52768431 52772199 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2283 19 129 Eukaryotic Initiation Factors Gene Family AT3G19760 32.479 9.18e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2283 K14777 - mtr:MTR_1g023070 176.792