Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2257 ATGACTCCTGTTTCTCTGAATCCACCAGGTCCTAATTCCTTACTACAAGGTCAAAACCAATTCTTCAATGTTTCTCCTGTTAATCAGGACAACACTCCTACCTTGTTTAACTTACTTGGAGGAGACTATAATCATGATCATCATCAGGATTATAAGGTGGCATTTAATCAAGATGGATCATCATCAAGCAATCATCAACAACAAGTCTATAATTCATCAAGTGATTCAGTTATGGTTGATTCAAGCAGTGCACGTGACACAAATTTATCATCATCCTTGGAGCTAGAAGATAGTAGCAAAAACAATGGTCACGGGTCTGAGAAATGGATGTCTTCAAAGATGAGGTTGATGAATAAAATTGCTACCGTTACCACAACTCCAATGATGAGACCAAATACTGACAAAGCTATCAAGACAACAACTCCAATTATGAGAAGCCCTCGTAGTAACAATAGCGGTAACAACACCGTTAGGGTTTGTTCTGACTGTAGTACAACCACTACCCCACTTTGGAGGAGTGGCCCCATGGGTCCTAAGTCACTTTGCAATGCTTGTGGAATCAGGCAGAGGAAGGCTAGAAGGGCCATGGCAGAAGCTGCTAATGGTTTGGCTACATCCCCTAAAAGTAGAGTGCATAAGGAAAAGAAGCCTACACAGTTCAAGATTAAGATCAAGTCTACTGCTAGCACTTCTACAGCTGCAACTACTTCTGCTGGCTCATCATCTCAGGATGTGAAGAATCATGAATCTTTTGCATTAAATTTGAGGAAAAACTCCGATTTCGAGTCGCCTTATGATGAAGTAGCTAGGGCTGCAAGACTTCTCATGGATATTTCCTCTGGTGTTACTTACTGA 855 0.4117 MTPVSLNPPGPNSLLQGQNQFFNVSPVNQDNTPTLFNLLGGDYNHDHHQDYKVAFNQDGSSSSNHQQQVYNSSSDSVMVDSSSARDTNLSSSLELEDSSKNNGHGSEKWMSSKMRLMNKIATVTTTPMMRPNTDKAIKTTTPIMRSPRSNNSGNNTVRVCSDCSTTTTPLWRSGPMGPKSLCNACGIRQRKARRAMAEAANGLATSPKSRVHKEKKPTQFKIKIKSTASTSTAATTSAGSSSQDVKNHESFALNLRKNSDFESPYDEVARAARLLMDISSGVTY* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2257 284 MobiDBLite consensus disorder prediction 55 111 - -
Mal6g2257 284 ProSitePatterns GATA-type zinc finger domain. 160 185 IPR000679 GO:0006355|GO:0043565
Mal6g2257 284 Gene3D - 154 230 IPR013088 GO:0006355|GO:0008270
Mal6g2257 284 Pfam GATA zinc finger 160 193 IPR000679 GO:0006355|GO:0043565
Mal6g2257 284 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 158 198 - -
Mal6g2257 284 MobiDBLite consensus disorder prediction 55 108 - -
Mal6g2257 284 ProSiteProfiles GATA-type zinc finger domain profile. 154 190 IPR000679 GO:0006355|GO:0043565
Mal6g2257 284 SMART GATA_3 154 205 IPR000679 GO:0006355|GO:0043565
Mal6g2257 284 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 42 282 - -
Mal6g2257 284 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 42 282 - -
Mal6g2257 284 CDD ZnF_GATA 159 196 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2257 Mal-Chr6 52298641 52300591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2257 103 284 C2C2-Gata Transcription Factor Family AT4G26150 39.906 5.56e-23 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mal6g2257 GATA 5.7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2257 - - mtr:MTR_1g016170 406.757